RNA id: XM_021613211.2


Basic Information

Item Value
RNA id XM_021613211.2
length 1210
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC110530281
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61340002 ~ 61341211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCAAAAAAGTGGCGCGCAGAATCTAGGGCAATCACAAGTGGTCGAGAAAGAGTGGGGGGTGGGACCACTGACTTAACAGGACTGCGCACACCAGAACTCTGTAGGAGAGAAGTTCTTCACAAAGGTCCAGCGTTTGGGCGCAAAAGGATGGATTCTTTCAGATCGGGCTCTAGCATAggactgtctccctctcccagaGACCGACAATCACCCATGAGTTTTGATCAGGAGCACTCACAACCGGGAACAATGGCCGGAGTTCAGGCGGGAACACTTGGCTTCCCATCTGAATCGCTGTGCGTAAAGTACGGGGAATTTTTAAAACACACCGCTGCCGCCGCAGCAGCCGCTGAGAGCAGTGGCGGGGAGCAGAGTCAGGATGATGACAGTGATGGCATTGGCAGGAGTGACATGGTGCTTTTTCCTGAGGAAAGGCTCATGGCATCAATGGCCAAATGTGACGCAGGTAAGAAACACAAAGAGCAGAAAGTGCTGCGGCTGAACATTAACGCCcgtgagaggaggaggatgcaTGACCTGAACGACGCGCTCGATGAACTGAGGTCGGTGATCCCCTACGCGCACAGCCCGTCCGTACGGAAGTTATCCAAAATAGCCACTTTGCTCCTCGCCAAAAACTACATCCTCATGCAAGCGCAAGCACTTGAAGAGATGAGAAGACTTGTCACTTACCTTAACCATGGACCCGGCGTTACCGCGGCGAATACATCTGGTGCACCCGGATTAGGGCTCTATGACCAGCAGACAGGATACCCGTTCTCTGCTGGGACTCCAGACCCTTTCCATAGCAATGCAAATCTCTTTAATAAACACTTCAACCATAAACCTTGAACAGTTGTGGCCGACGACACTAACAGGGGACTTCAAGCTTCGTGCACACAACTGAATTGATGAATTGATGGGACCAGCGTGACTGACTGAGAAGTAACCAGATTACCAAAATATGGATTCTTACTGTATATGATGTTATATATTTCATGGTGATTATGTATCGAAATAGCTGTTGTTTTTGCAACGCCAAACGAAATGACAGCTCCATAACATGGTCAAAATGGTGAGGCTAATTTGTCTTTAACAAATTACAATGCAAGTCCAGTCTATTTATTTGACCATTATGTAGGCCTTTATTCATTTTATTCAGTTTGATTCGATGATGTTCGATGAATAAATTGTATTGGTGATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU830698 lncRNA downstream 14477 61325226 ~ 61325525 (-) True G731375
TU830690 lncRNA downstream 29917 61309575 ~ 61310085 (-) True G731367
TU830688 lncRNA downstream 33453 61306320 ~ 61306549 (-) True G731365
TU830667 lncRNA downstream 42818 61295363 ~ 61297184 (-) True G731344
TU830683 lncRNA downstream 51449 61288312 ~ 61288553 (-) True G731360
TU830704 lncRNA upstream 1583 61342794 ~ 61343177 (-) True G731381
TU830705 lncRNA upstream 2903 61344114 ~ 61358907 (-) True G731382
TU830707 lncRNA upstream 3399 61344610 ~ 61380805 (-) True G731383
TU830736 lncRNA upstream 45342 61386553 ~ 61436469 (-) True G731412
TU830765 lncRNA upstream 84099 61425310 ~ 61478476 (-) True G731439
XM_021611264.2 mRNA downstream 100231 61233873 ~ 61239771 (-) True LOC110529124
XM_021613198.2 mRNA downstream 106572 61221771 ~ 61233430 (-) True LOC110530276
XM_021613197.2 mRNA downstream 139005 61189832 ~ 61200997 (-) True adhfe1
XM_021613195.2 mRNA downstream 150353 61184985 ~ 61189649 (-) False si:dkey-97a13.12
XM_021613196.2 mRNA downstream 150356 61184992 ~ 61189646 (-) True si:dkey-97a13.12
XM_036985921.1 mRNA upstream 662961 62004172 ~ 62033971 (-) False LOC110530300
XM_036985922.1 mRNA upstream 662961 62004172 ~ 62033971 (-) False LOC110530300
XM_021613220.2 mRNA upstream 662961 62004172 ~ 62033993 (-) False LOC110530300
XM_021613222.2 mRNA upstream 662961 62004172 ~ 62033993 (-) False LOC110530300
XM_036985923.1 mRNA upstream 662961 62004172 ~ 62033993 (-) False LOC110530300
TU825771 other downstream 3476125 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 3493313 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 3528580 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 4034476 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 4202889 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 703824 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 839476 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 3649090 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4176956 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 4759885 66101096 ~ 66101627 (-) True G736841

Expression Profile