RNA id: XM_021613220.2


Basic Information

Item Value
RNA id XM_021613220.2
length 6493
RNA type mRNA
GC content 0.50
exon number 25
gene id LOC110530300
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62004172 ~ 62033993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtggtatattcgCCATCTACCACGCCCCTTCGGACCTCGTTGTTTAATTGAAGATCAGAGCGTGTGGATGAGAAAGTGAGACATCCCACTCGCTTGTGTTCTCTGGTTCAAATAGAGACAATGAACTAAGCAGATCAGACACAGCTGCCACCACGGCCGGTGGCTCTGCTAGTGACGAACAATATGGCGCCGGGAGTAGCTCTTGCTTCTGGACCAATCGTTGTCTAAAGTCCCTTATCGGGCAGGATGAACCTATGCGGCCAATATTTAAGcaggcaggcagaggcCCTGAAGGCTGACATGACAGATTCTAAGCTTGGCGGAGCAGAGGTCTGGACTTCAAGGCAGGCTCTTCAGGACTTGTACCAGAAGATGCTGGTGACTGACCTGGAGTATGCTTTGGACAAGAAAGTGGAGCAAGATCTCTGGAATCATGCTTTTAAGAATCAAATAACAACACTACAGAGTCAAGCCAAGAACAGAGCCAACCCCAATAGAAGTGAGGTGCAGGCCAATCTGTCCTTGTTTCTCGAGGCAGCTAGTGGATTTTACACACAATTACTACAGGAGCTGTGTACCGTGTTCAACGTGGATTTGCCGTGTCGTGTGAAATCATCTCAGCTTGGAATTATCAGCAATAAACAGACCAACCCCAGCACCATTGTAAAACCCCAACCTAGCTCTTGCTCTTATATCTGCCAGCATTGTCTTGTCCACCTTGGCGACATTGCACGATATCGCAACCAAACCAGCCAGGCAGAGTCCTATTACAGACATGCAGCTCAACTTGTCCCCTCAAATGGTCAGCCTTACAATCAGCTGGCCATCCTGGCCTCCTCTAAAGGGGACCACCTCACAACGATATTCTACTACTGCAGGAGCATCGCCGTCAAGTTCCCTTTCCCTGCAGCCTCCACCAACCTGCAGAAAGCTCTCACTAAAGCTATTGAAAGCCACGATGAGGTCAAAACAAAGTGGAGTATGTCAGATTTCATCAAGGCCTTCATCAAGTTCCACGGTCACGTTTACCTGAGCAAGAGTTTGGAGAAGCTCAACAACCTGAGGGAGAAGCTGGAAGAGCAGTTTCAGagGCTGATTCGACAGAAAGCCTTCAGCTCCCAGCAGCTGGTCCACATCACGATTATCAACCTGTTTGAGCTGCACCATCTGAGGGACTTTGGCAACGAAGCAGATGACCAGAGCTTCAGCTCCGATGAGCAAATCGGATGGTTCCAACTTCTCGGCCTCTTCATGTCATTTCTGGGTATCATGTGTAGCCAAGCATTACTGAATAAGAACCGAGGAGAGGAGATCATGGGAGAATGTCCACTGCCGGCCATCAAGGTGTCTCTGGACTGGCTCAAACTGCGATCCACTGTTTTTCAGGACAGTGCTGTGAACAAACGACAGTATGTTTGGCCTTGGCTGGTGTCCATTCTGAACAGTTTCCAACCGAAGGAAGATGATGTTTCCTGTGCATCAGTGACTCCACTTCCAGAGGAGTTTGAACTGCAGGGGTTTCTGGCTCTCCGGCCAGCTCTACGGATCCTTGACTTCACTAAAGGCCACCAGGGCGTTGCTGTGGACAAGGAGGGTCTGCCAGTCCGTGCCCGTCACCAGAGGCTCATCAGTCTAGGGAAATGGGTGGCAGACAACCAACCAGGGCTGATTCAGTACAAGTTCAGCGACAGTCTGCTGTTGTTCATCACTGACATTGAGGAGCTCACAATTGAGGAGCCCCAGGAGAAGGATGCCCCTGTGCTCCAGGAGTCCTCCAATGGAGAGCAGACTCCCAACGAGGGCAACATGGGTCTGAAGTCAGTCCTATCCATGGGCAAGACCCAGAACAGTGTGTTGGAGATTGGCGAGAGACCCGTGGTGACTTTCAAGGAGAACATCAAGCCCCAGGAGCAGAGCAGGGAGCCCAGCCGCAACCAGCACCATAAGGATGCAGGGAAGGAACGGAGGGACTTCGGCAAAGGTAACGGAGTGCTGGGAAAAGGAGAGCagaagagggatggaaagaggaagAGTGAGGTGAAGAAGAACAGCCATGAGAAGGCCGCAGATGCAGGGAAACAGGTGAAAGCCCAGCCGGAGATGAGGACACCCGTGTCTGAGGCCCGGAAGACTCCAGTCACTCAGACCCAGACTACCTGCTCCTCCCAGTTcatccccatccaccacccaGGAGCCTTCCCTCCCCTGCCCAGCCGACCAGGTTTCCCTTCTCCGTCTTATGTGATCCCTCCTCCTGTGGCGTTCTCCATGAACCCTGGCTTCACCTTCTCTACAGGCATGTCTGTCTCCGGGCCATTCCTACAGCCGGTCGCCCACCCTCAGCAGCCTGGCGCCCAGCAGGTCCAGGCTGGGAAGCCGTCGCACATTCCATACAGCCAGCAGAGGCCAGCAGGGCCGGGGGCCATGAACCAGGGGCCCCCCCAGGGCCAACAGGGTCCTCCCCAGCAGCAGCCCTCCCAGGCCCAGCAGTCCATGCAGCAGTCGGTGCAGCTTCAGGCTTTGgcccaacaacagcagcagcagtcgccCACTAAGCCTGTGCAGCCAGTACAGCTGGGCAAAAGCCCACCTCACCATCCAGGGATGCATCAGCAGTACATGCAGGTTGACCAGGCTGGCCAGATGTGGAGCCAGCACCAGGGGCAGCCCACCATGCAGAAGATGCAGGTGCCTGTCAAGCAGCCCTACTATGGCATGCCCCCCCAGGACTCCCTGAAGCTCTTCGAGCAACACCCTGTGCAAACTGCTGGGCAAATGCCCATGCAGCCACAGCAGCAGAGCAGCATGGACAAGAAGATGAAGTACCCGGATGTGAAAATGCAGGATTTTTACTGGGAGCTTCCTTACCGCATGGGGGATAACAGACAGACGGTGGGGGAGAGGATGGGCAAGCGGCCGCCCCCAGGGGTCTTCCACCCAGACCAGGACAACGCACCCAGAGGACCTCCCTTTGAGGACAACAAGAGCTCCCCTCTTCTGCCTCCAGACCTTTTAAAAAGTCTATCAAATTTTGAGGAGGAAGAGCTGGTCTTTACTAAGCCTCATGGTTTCTACCAGGCCTTGGCGAGTCCTCTTAGCACTGCTCCAGGAAGAAACCTATTTTCCAGAATGGAGAGTGGTGCTGAGGTGATGGGCCAGTCGTCATCTCTCATGCCCTTATCTGGGTTTCCAATTCAGgAGAGTTCCTATCAAAACAGCATTTTCAGCCAGGCGTATGGGAAAAACATGTCTCCCAACCCCAAGCCTGATGCTCCCATGCTGCACCAGGAACCTtctctgtactccctgtttgaAGGAACTCCATGGTCCCCGTCCCTTCCCGCCAGCTCAGATCACTCTACACCAGCAAGCCAGTCCCCTCACTCTTCCAACCCAAGCAGTTTACCATCTTCCCCACCCACACACAACCACGGCTCCATCCCCTTCTCTAACTTCGGCCCCATAGGAACGCCCGACAGCCGAGACAGGAGGATGGTCGACCGCTGGAAGTTGGAAAAGACTGGGGCTGTGAGTGGGTTTGGTTTGGACTACCTGCCTGCTGTGTCATCCTCTACAGATCACCGAGCCCCCGAAAACAGCTGGCACCAGGGAAACGCCCCCAGCAGCTCCTGGGCGGCCCAGGAGTCGCCCATGGAAGACTCCTCCACTGTGCTCCTTGACAGTCTGAAGTCCATCTGGTCCAGCTCAATGCTGCAGCCGGGGCCGTCGGCTTTGGAGCAGCTCCTCATGCAGCAGAAGCAGAAGCAGCAGAGGGGCCACGGCACCATGAACCCTCCACACTGAAGGGCCTGCAGTCAGAAGCACTTGTGTgatgaagtaaaaaaataaaaacacgcTCCAAATCGGAATTACCGGCAAATGGAGGATGGGGAAGGTGAAATGATTTCCCAACAGGCTCAAAACACCCCTCGGCTGACGAGGAGGAACGGTACAAGtcttctctcgcgctctctctgtgcCTCGCATGGCAACGAGGGCGTGCAAGCACCACCTACTCCACCTCGCTGCTGAGCACGAAGCTACTGCGGGGTCTAATTTGTAGGATTCTTACGTTGAGGAAACTGAACATCTGACAGCCAGTCACCATGCTCAACACCTGAATTCCTCTGGAGAGTGTGGGAATAAATGACCATCCTTCAGTCCATTTCTCTTGGATTCCATGCATCTGATCTCCTCTGAAAGCTCCTTGCGCTGCTTTTGGTGTGGATTTACTACTACTCTGTCTCGACTTACCTACTGTAcaagagaggagaataaaggtGGTGCAGGGTGTTTTTGGGAAGGCAAGGTGGGCCTAAAACGGTAGACGTGGTGGGGGAAAAAGACTGAAATCTTACTGAATTCTTGACTAAATTGTATTTCTTGGACTAAGAAACAGGATGAAGATGGACTATGTAGCTGGGGAATGAATGAATGGAGTTATTCTAGCTATATTGCCGCAGATGGTAAGATGTGGGGGTAAAAGCGTGCCTGTCTTTCTGTGCACAGAATCGTTTGAAAATACCGAAGCAGGTTATGCTGTAGATGCGAATTTTCCAGTTTGCTAATTGGACTGCAGATTGTTGctttctgtaaatgttttctaagGAGGGAGGTACATCTCCAGGTCAATTGAGGATGATGGGAATGCTTTAAAAGCTCACCACAATGTTATCTCAACAACAAACGGAGAAAGGGAAGAGAAAATAGATGTAGGGAAAGTATTATTAGCTCTAATAGATTGCAATTATTAGAAATACTGTATTTTGTGATTTGTTCGTAACAGTTTTAGCTTTATGAAATATTGGGTAACTGTCCAATAGTTTACTGCTTATGGGGGAAGTCTATATTTATATGTTCCTCGTTCCCCTTGCTTCTTTCCCTTCACTCACCTTTCTTTGAGGTGAAATGTAACTCTAGCTTACCTGCGTAGTTGTTTTCGTTTGTTCATGTTCTGCCTTTTTAAGTTTTAAGCATCTTTTTTGGCTCTCATTGTGCCTggtaagttttttttttactcttatTACTATCATGGTTGGCACTGTCTTGTAATTGAAACAAGCAAACGGGTCCAGCAAAGCTGCTGGTTCAGCAATATGGGGCACAAGCCGAGCCAGGTGGACAGACAGTGGGCTGGGCTAAGGCTGGGTGACAGAGAGCAGGACAGTTGAAGTAGTCCCTGACTCCCCTACATGGCTCAGAATAGGGGGGAAAGATTGATTTATGGTAACCTCTTTGCAACCACTACTATTATCTCAAAAGTAATTGCTTCATCCTCTAGGATAGTGGTAATCATCATATTATACCCCGGAGAGTGGCTCGCATGGTTTTCTTTTCTAAAGTCGTAGCTCAGCTTTTTACATAGCTATTGTGTAACTAACTGAACTAGTTGTTTGGGTATTACGTTCCTGTCACTTGGGGGTACGCCAGTGTGAATCTGTTATTGGCTAAGTTCCTCTGATGTCATGACAAGTGCCGTAGCCGGATAATGACTGTTTCCTCCCAAATAATGGAATCCCTGAAGCACTGAGCGACAATCAGCAGACTCGAGAGGTTCTCCAGGGGCCAGTCTTTGAGGCATAGCTCTAAATTGTCAGTTGAGTCTAGGGGTCACTGTTGGATAAGATTAGAAATTTGATGACTATATGCAGTGGTTCCCTCTTTATGGTTTAGGCAGCATAAAGCATTTTGTATTTAAAAGGTATACGAAGACTGAAtcttttatgggggggggggggggggtgtgtttttattttcatgTAGAGAACATTTTATTAAAGCCAACTTTAAATGTCTATTTTCTGTGCTTTTCCTGTTGCATTAAAattgtattaaaaaaaacaaaatagacTGAATCTTGGGACAAATTTGTCCTGAAATGCTTACAAAAAAAACCTTATTTAGCACATCAAAACAAGAGTGGAACTGTGgccctgttttctctcctctatctGCTCATTCTAAGGGGTTCTGATTTGAAATGTGTGGTTGGATCATCATGAATGGTGTTTGTCAGTGGTGTTGAGCTTGCTGTCTAGATGGGCGGTAGAGGGAGTAACGGGTAGAATGTTGGAAACGCCCTGCTCTGGGCATTCTGCCATTTACTACATTGTTAATGTGGACTCGCATCTCTGCCCCATCCTTAATACATTGTTTTCACCGCAGCAAGATGTGTGGAAGAGAACCCTGCACTTTGGGCAGGTGTAACATTCCATACTACAACAGTCCTGTGGGACATTACAGGCACTGGAAAAATGACCAACCAACAACATTAAGCACTCTGTCCCAGTTTAAGTTCATTGCCTAGGAGAGAATCACTGATACTGCATGAGGATTTGGAATTCAGAATGCTTCACTTGTTATGGGGAGGGAAGGGGGGTTCATTCAGAAATAGGCTTGTGTTCTAGGTTTTTTGTCTTTTGTCTTTCTGTAGACATTCAGAATTGGTAGAAGCAGCCTTGTCTTGAAATAAAGTAAACCATGTTCTCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831144 lncRNA downstream 16172 61941991 ~ 61988000 (-) True G731765
TU831090 lncRNA downstream 130256 61870180 ~ 61873916 (-) True G731726
TU830989 lncRNA downstream 132617 61710897 ~ 61871555 (-) True G731629
TU830783 lncRNA downstream 287956 61708834 ~ 61716216 (-) True G731452
TU830984 lncRNA downstream 297331 61700862 ~ 61706841 (-) True G731625
TU831142 lncRNA upstream 11042 62045035 ~ 62047266 (-) True G731764
TU831250 lncRNA upstream 105892 62139885 ~ 62142953 (-) True G731861
TU831391 lncRNA upstream 327700 62361693 ~ 62362031 (-) True G731994
TU831438 lncRNA upstream 364246 62398239 ~ 62398459 (-) True G732041
TU831538 lncRNA upstream 436928 62470921 ~ 62471148 (-) True G732140
XM_021613211.2 mRNA downstream 662961 61340002 ~ 61341211 (-) True LOC110530281
XM_021611264.2 mRNA downstream 764401 61233873 ~ 61239771 (-) True LOC110529124
XM_021613198.2 mRNA downstream 770742 61221771 ~ 61233430 (-) True LOC110530276
XM_021613197.2 mRNA downstream 803175 61189832 ~ 61200997 (-) True adhfe1
XM_021613196.2 mRNA downstream 814526 61184992 ~ 61189646 (-) True si:dkey-97a13.12
XM_021613225.2 mRNA upstream 15910 62049903 ~ 62064021 (-) True LOC110530302
XM_021613226.2 mRNA upstream 34004 62067997 ~ 62145625 (-) True LOC110530303
LOC110530961 mRNA upstream 131856 62165849 ~ 62185174 (-) False LOC110530961
XM_036985932.1 mRNA upstream 151749 62185742 ~ 62231420 (-) False LOC110530304
XM_036985933.1 mRNA upstream 151749 62185742 ~ 62235671 (-) False LOC110530304
TU825771 other downstream 4140295 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 4157483 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 4192750 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 4698646 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 4867059 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 11042 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 146694 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 2956308 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 3484174 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 4067103 66101096 ~ 66101627 (-) True G736841