RNA id: LOC110530961


Basic Information

Item Value
RNA id LOC110530961
length 4028
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC110530961
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62165849 ~ 62185180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttagagctgTCATAAGACTATCTtgttaatatattattatttgtaggTCAGTCACGGCCAATTAACCCTGCTCCAACAGATATCCACAAATCCGCCATGGCAGACATCAAGAACTTCCTGTATGCTTGGTGTGGGAAGAAGAAACTTACACCCAGCTATGACATTCGAGCAGCTGGAAACAAAAACCGGCAGAAGTTTCTGCGTGAGGTTCTTATTGAGGGATTCAACTACACTGGAATGGGAAACTCCACCAATAAGAAGGATTCCCAGGCAAATGCTGCCAGAGACTTAGTCAATTATCTTGTCGGAGCTGGAGAAATGAATGCAGCTGAAGTCCAAGCCCTTGGGGTAAGTGTACCTGACTTCAGTGAGCCTAGCTGTGGGGGAGCAGGGGGTGATAAAGGCAACGTCGGCTTTGGAAGTCTTCCTCCAAGTGCACCTCACCTGGTTGTGAAAGCTGAGAAagCGAATGCACCTTCTGGACCATTCCCAAGTGTCACTGGTTTGGGATATTCGGGAGGTGATAGTGGAGGCAATTATTCTGGAGGTGCTGGAAACAGCAATGCTCCATGGGATCGTGGGGCCAATCTAAATGACTACTACTCAAAGAGAGATGAGCAAGAGgcacaggcaACTCTGGAGTCTGAGGAGGTAGATCTGAATGCAGGACTCCATGGCAACTGGACTTTAGAGAATGCCAAAGCCCGTCTGAACCAGTTTTTCCAGAAGGAGAAGAATCAAACCGATTACAAATACAGCCAAGTTGGGCCTGACCACAACAGGAGCTTTATTGCTGAGATGCAGTTGTTTGTTAGACAGCTTGGTAGAAGGAAGTACCGAATAATTGCCCGCGAGCATGGCTCTAACAAGAAGCTGGCGGCCCAGTCCTCTGCGCTGTCTATCGTCCGTCAACTTTACCATCTGGGTGTCATTGAGCCTCATACTGACATGACTAAGAAGAAAGAGGGGGAAATTTTGGAAGCTTTTGAGGTGAATGTGGTGGATGATCTGCAACATCAGCTAAAGAGTATTGCCCAAGAACTGGGTGTTGTAATTCCACCTCCAGTAATTAAACATTTTGCCTGTCTCCCGCCACCTGATCCAAGTACCCCAGTGTCCCTAATCCAAGGGAAGATGGCTGTGTTTGGGCCCTCCCAGAGACAAACCTTGGCCGGGGTGGTGCCCTGGTCCCCCTCCGCAAGTTAACTGGAACCCCTGGACCAGCAGCAATATCGACGAGGGCCCACTAGCATTTTGCACCCCAGAGCAAATCAGCGCTGACCTCCAACATGAGCTGACCTGTCAATTGGAACAAGATCAAAGCTTTCTGAAGGTCATTGGGGAGTGAGATAGGCTTCCAGTGAAGAATTTTGAGAGGGGGAACATGTCTGCTGGTCAGGGTAACTCAGTGGTGATCATTCGAGGGGCGACTGGCTGTGGCAAAACCACCCAGGTTCCCCAGTACATCCTGGATCAGTTCATCAAGAGTGGGAGGGCGTCCGACTGTAACATTATTGTAACCCAGCCCCGGCGTATCAGTGCAGTGTCTGTTGCAGAGCTTGTTTCctacgagagaggagagaatgtcgGTAAGACCTGTGGGTACAGTGTCCGCTTTGAATCCATCCTCCCACGGCCCCATGCCAGCATCATGTTCTGCACTGTTGGTGTGTTATTGCGGAAGCTGGAAACAGGTATTCGTGGGATCAGCCATGTGATTGTGGATGAAATCCACGAGAGAGACCTCAATACTGACTTCCTCACGTGGTGCTGAAGGATGTGGTCCAGACATACCCAGAAGTGCGCATCATACTCATGTCTGCCACCATCGAAACCACCATGTTCAGAGAGTACTATTTCAACTGCCCCGTCATCGAGGTGTTTGGCCGCACATTCCCAGTACAATAGTACTTTTTAGAagattgcattcagatgactcatTTTATTCCTCCTCCGAAtgatagaaagaggaaggaggagatgaaGATTGGATAATAATTTGTCCAATTTTCACCCCAGAGACAAAGCGCTCCATGGCCCAGATGAATGAGAAGGAGACTCCCTTTGGGCTGGTGGAGGCCCTGCTGAAGTACATTGAGACCCTCCAGGTGGCCGGGGCCGTGCTCGTCTTCCTGCCCGGCTGGAACCTCATCTACTCCATGCAGAAACACCTGGAGATGAACCCACACTTTGGAAGTCAACGGTACCTGATTCTACTGCTCCACTCTCAGATCCCCAGAGAGGAGCAAAGAAGTGTATTTGAGCCTGTGCCTGAAAACATCACcatgGTGATCTTGTCAACAAACATCGCAGAGACCATTATTACCATCAATGATGTAGTATACGTCATCAACTCTTGCAAgcAGAAAGTGACACTGTTCACGTCTCACAACAACATGACCAACTACGCCATGGTCTGGGGCTCTGTTTTATCTGTGTAGCAGAGCACACTTTGACAAACTGGAGACCCATATGACCCCTGAGATATTCCGTACTCCTCTCCATGAGGTAGCCCTGAGCATCAAGCTGCTGAGACTAGGATCCATTGGCCATTTCCTTTCCAAGGCCATCGAGCCCCCTCCCCTGGACGCGGTTATCGAGGCAGAACACACACTGAGAGAACTGGATGCCTTGGACACTAATGACGAGTTGACTCCACTTGGTCGGATCCTTGCAAAGCTTCTAATCGAGCCACGGCTGGGAAAGATGATGATTATGCGCTGCATTTTCAaGTTTGGAGATGCAGTGTGCACCATCTCCGCAGCGTCATGCTTCCCAGAGCCCTTCATCAACGATGGCAAGCGCTTGCGCTACGTGCACCGTAACTTTGCTGGCACCCGCTTCTCAGACCACGTGGCACTGCTGTCAGTCTTCCAGGCTTGGGACGAGGTGAAATTTGGAGGTGAGGATGCGGAGTGCAGATTCTGTGAACACGAAGCTCAACATGTCCACACTGAGGATGACCTGGGAGGCCAAAGTGCAGCTGAAGGAGAGCCTCATCAACTCTGGCTTCCCTGAGGagtgtttgATGACACAGATGTTCAACAACGTTGGACCTGACCGCAACCTTGACGTGGTCATCTCTCTCCTGACATACGGCTCCTATCCCAACGTGTGCTACCACAAGGAGAAGAGGAAGATTCTCACCACTGAGGGGCGCAATGCCCTCATCCATAAATGCTCTATCAACTGCCCCTTCAGCAGCCAGGACATGACCTACCCATCACCGTTCTTTGTCTTTAGCGAAAAGATCCGGACTCGAATGACACTAGTCAGCCCACTCCAGCTGATCTTATTTGCCGCCAAGAAAATCACATCAAACGGGGAAATCATTGAGCTGGATGATTGGATCAAACTGAAGATACCTCATGACGTGGCTGGTTGCATAGCTGCATTGAGGGCTGGAATGGAGGCCCTTGTTGTGGAAGTCATCAAAGACCCTGAGTACATCAGACAGCTGGACCCCACAAACGAGCGCATGCTCAACATCATCCGCCAAATCTCCAAGCCCTCCGCATCCGGGCTTAACCTCAAGGTCAACAATCTACATTTTGGCGTTGGTCCACGTCCTCCTAAAATGGGCAGGTTTGATGGAAGTGGAGGAGgggtacagaggaggaggaagtaaCAGAGGAAGCGGTGGCGGAGTGTAGGTGGTGGATACAGGGGGTGTCAGGGATAATAGAGCAGGTACATGTTTGGATGTTGTATATAAAAATGCATAATATGATGTTTGTTTATTTGACTGTAATATTAGAAAAATGTCTACGGATGTTTTTGTTTTAGTTGTGCATTGTGtgacaccccaccaccaccactttgAAGTCAAGGTTATTGGCCCACATataataatttaacaattttaagTCTTTGTTATATAGATCATCCATTCTCTGTATTATCTCTTAGACTGACTCATTGGATTAGTTAGCGTTAAATATTTAATTTCATGAGCTTCATTTTGTCAGTGATTTATAACTTAAAGATGATCATTAAAGAAATCAATTCAATAAAATACTTTTCTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831250 lncRNA downstream 22896 62139885 ~ 62142953 (-) True G731861
TU831142 lncRNA downstream 118583 62045035 ~ 62047266 (-) True G731764
TU831144 lncRNA downstream 177849 61941991 ~ 61988000 (-) True G731765
TU831090 lncRNA downstream 291933 61870180 ~ 61873916 (-) True G731726
TU830989 lncRNA downstream 294294 61710897 ~ 61871555 (-) True G731629
TU831391 lncRNA upstream 176519 62361693 ~ 62362031 (-) True G731994
TU831438 lncRNA upstream 213065 62398239 ~ 62398459 (-) True G732041
TU831538 lncRNA upstream 285747 62470921 ~ 62471148 (-) True G732140
TU831743 lncRNA upstream 429637 62614811 ~ 62615105 (-) True G732337
TU832351 lncRNA upstream 679440 62864614 ~ 62865918 (-) True G732910
XM_021613226.2 mRNA downstream 20224 62067997 ~ 62145625 (-) True LOC110530303
XM_021613225.2 mRNA downstream 101828 62049903 ~ 62064021 (-) True LOC110530302
XM_021613220.2 mRNA downstream 131856 62004172 ~ 62033993 (-) False LOC110530300
XM_036985932.1 mRNA upstream 568 62185742 ~ 62231420 (-) False LOC110530304
XM_036985933.1 mRNA upstream 568 62185742 ~ 62235671 (-) False LOC110530304
XM_036985926.1 mRNA upstream 568 62185742 ~ 62256687 (-) False LOC110530304
XM_036985927.1 mRNA upstream 568 62185742 ~ 62256687 (-) False LOC110530304
XM_036985928.1 mRNA upstream 568 62185742 ~ 62256687 (-) False LOC110530304
TU831141 other downstream 117730 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 4301972 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 4319160 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 4354427 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 4860323 57286516 ~ 57305526 (-) True chd7
TU835604 other upstream 2805127 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 3332993 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 3915922 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 4008480 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 4374022 66559196 ~ 66560517 (-) True G737449

Expression Profile