RNA id: XM_036985932.1


Basic Information

Item Value
RNA id XM_036985932.1
length 4924
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC110530304
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62185742 ~ 62275234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTGATTGAATAAATGCGGTAAAATCTCTTCCGCTGCTGGCATGCCAAAAAGGAGTCTGATGAAGTGAAGGTTAGAATTGCTgccaagaggagagagtgagtgtgatagggaaaggaagaagaagagggaggtaGATAGCAGAGGGAGACTccaagagagaaggggagtgagagggggacCAGGAGAAGCATGGAGTGGAGTGCTATTTCAGGGAGAAATAGGTGGGATGCCAGACTGCAGGAAAAAAACTAGTTCATTAAGAAAACTGAGATCCTGGGATGATCTTGAAAGAAATCTGAGATCAATGGGATGGCTTCATAGTACTGTAGAAGATGAACAGTTAAAAGGGAAATGACTTCGCCTCGTTAGCTGATGGTGATGTTCTGTGTTTAGCCAATCGGATGCTGGCTAACCCTGTTCATCTCCTCCTCAGATGATGGGGAACAGCTGTGACCGAGAAGTGTCTGCTGAGAGGTCCCCCAGGAGGCGGAGTATCACAGGCCTGGGGAATTCAGAGAAGAACATATCCCTGGACGTACCCAACTCATCTCCCTTCAAAGTACCAGGGTTTTTCAGCAAACGACTGAAGGGATCCATAAAGCGGACGAAGAGTCAGACCAAACTGGACCGCAACACCAGCTTCAGGCTGCCCTCCCTGAGACCTTCAGAAAATGACAGATCCCGAGGGCTTCCTAAGTTAAAGGAGTCGTGTTCTCACGAGTCCCTGCTCAGCCCAGGCAGTGCAGTAGAAGCCCTGGATCTGGGAATGGAGGAAGATGTCTATGTCAAACCGCTCCACAGTAGCATATTGGGACAGGAGTTCTGCTTCGAGGTGACCTACTCAGGAGGAAGTAAGTGTTTCAGCTGCTCCTCAGCctcagagagagacaaatggatggagaaCCTGAGGAGGACGGTCCAGCCAAACAAGGATAACTGCAGACGAACTGAGAATGTCCTCCGGCTATGGATCATCGAAGCCAAGGACCTGCCTCCCAAGAAGAAGTACTTCTGTGAACTGTGCCTGGATGATATACTATACGCCCGCACCACCAGCAAAACCCGGGCCGACTGCCTGTTCTGGGGGGAACACTTTGAGTTCTACAGCCTGCCTTCTGTCCGTAGCATCACTGTGCACATCTACAAGGACGtggacaagaagaagaagaaggacaaGAACAACTACGTGGGCCTGGTCAACATCCCCATCGGGGGGGTGACAGGGAGGCAGTTTGTGGAGAAGTGGTACCCAGTCAGCACCCCCACCACCAACAAGGGTAAAGGAGGAGGTCCATCGATCCGGATCAAGTCCCGCTTCCAGACCATCTCCATACTGCCCATGGAGCAGTATAAGGAGTTTGCAGAGTTCATCACTAACAACTACACCATGCTGTGTTCTGTTCTGGAGCCGGTGATCAGTGTGAAGAACAAGGAGGAGATGGCCTGTGCCCTGGTTCACATCCTACAGAGCACCGGACGGGCCAAGgACTTCCTGACAGATCTAGTGATGTCTGAGGTGGACCGCTGTGCAGACCACGACGTCTTGATCTTCAGAGAGAACACTCTGGCCACCAAGGCCATAGAGGAGTACCTCAAACTGGTGGGACAGAAGTACCTGCATGATGCACTAGGAGAGTTCATCAAAGCGTTGTATGAGTCAGATGAGAACTGTGAGGTGGATCCGGGGAAGTGCTCCAGTAGTGAACTCCCTGAGCACCAGAGCAACCTGAAGATGTGCTGCGAGCTGGCCTTCTGCAAGATCATCAACTCCTACTGTGTGTTCCCGCGGGAGCTAAAGGAGGTGTTTGCAGCGTGGAAGCAGCAGTGTCTGACCCGAGGGAACCAGGACATTAGCAAGCGCCTCATCAGCGCCTCCTTGTTCCTCCGCTTCCTCTGTCCCGCCATCATGTCCCCCTCGCTCTTCAGCCTCATGCAGGAGTACCCTGACGACCGCACTTCCCGTACCCTCACCCTCATCGCCAAGGTCATTCAGAACCTGGCCAACTTCGCCAAGTTTGGCAACAAAGAGGAGTACATGGCTTTCATGAACGACTTCCTGGAGCATGAATGGGCAGGTATGATGCGTTTCCTCACGGAGATCTCCAACCCAGAGACCATCTCCAACACGCCAGGATTCGAAGGTTACATCGACCTTGGCCgagagctgtctgtcctccactcgcTCCTGTGGGACGTGGTGTCCCAGTTGGACAAGGGTGAAAATTCCTTCCTGCAGGCGACCGTAGCCAAGCTGGGCCCCCTGCCCCGCATCCTGGGGGACATAGCCCGCTCTCTGTCTAGCCCCACACCCATCCAGCAGCAGCTCCGACGCTTCCAGGACTACAGCTCCTCACATAACATCAGCGGCAGCGTCTCCTCAGGCCTGCAGAGGATATTCGAAGATCCGGCCGACAGTGAGGTTGACAGAATCAAGTCCCCAGTCCAAGAGCATGTTACAAACGGCCTTCACCGGGGGAAGCACCCTCTCCTGGGCCAGCAGCCGTCCGGCCATAGCATGAGCTTCTCagacaaggaggagagagagaacctcCTGACCAACGGACGCAGCATTTCCCTGGTGGACCTTCAGGACTCTCACATGGTCCAGAGTGGCAAGGGACCCCTCCACGATGCTCCCCCCAAGCTGAGCAGGGTGGGCTCCCAGCTCTCTATCGGACACCCCCACCAGGCTACCACCTCACAGTCATACCAAGCCCTCCACCAGAAGCCCTCTTTACAGGACAACCTCCCCCAGAGTGCACCACAGGTGCGTCGGCCCCTGCACCCTTCCCTCAGCCAGCAGAGGAGCCTCCAGCCCCTGTCTTTCCAGAACCCTGTCTATCACCTTAGCAAccagacacaacaacaacacacagcaGTACACTCCACAACACACTCGGTCCACTCCCACTCAGTGCACTCCCTGCAGCCGGACTCCAGCTCTGAGAACCTGAGCACTGATAGCTCCCGCAGCCACAGCAACTCGGAGGTTGAGTTTGGAGGCGGGAGCCAGGGGGGGAAAGGGGGCAGGGTCCCGTCCAATAGCAGTCTGGAGGAGTTCAGCCGGCGGAGCACGCAGAGCGAAGACTGCTCCACGCCGCGCCGCCACAACCTGCCAGACCACCACAGAGGAGCCCACGCTGTAGCAGTGCCCAGGCAAAGCAGCACGGCCCACATCGTGAGGGTGGAGCAGCAGAGCCGCAGTGGGGGGAGTGGTGGGGCCCGGACGCCCCGCTCCCTGCCCCGCTCCCTGCCCCACAGCGCCTCTCTGCGCAGCAGCAGCTCCATCAACACAGAGCCCATGCCTATCCCCATCCAGGCCCAGCCAGGCACAGGAGGCCGCTCACACCAACAGTCCACCTGCTCCATGGAGAGCCCTGTGCCCCCCGTCAGGAGCGTTGCCAAGCAGCAGACGCCACCGCAGGTGGCGTCGCCGGTAGAGCCAGTCACCATGTCACCGGTAGAGAGGACAGCGGCGTGGGTACTGAATAACGGCCAGTTCGAGGACGAGGCGGCCCCAGCAGATCAGAGCAGGGAGGACAGCAGGCACGCCAAGAAGTATGAACAGGAGATCTCCAAGCTGAAGGAGCGCCTGCGGGTGTCTAGTCGGTGTCTGGAGGAGTACGAGAGACGTCTGCTGGCCCAGGAGCAGCAGATGCAGAAACTGCTGATGGAGTACAAGGCCCGACTGGAGGACAGCGAGGAGAGGCTGCGCCGGCAGCAGGAGGAGAAGGACAACCAGATGAAGAGCATCATCTGCAGGTTAATTGCTGTAGAGGAGGAGCTGAAGAGAGACCATGCAGAGATGCAAGCTGTCATAGATGCCAAGCAGAAGATCATTGATGCACAGGAGAAGAGGATAAGCTCCCTGGATGCAGCCAACTCTCGGCTAATGAGTGCCCTGACACAGGTGAAGGAGCGCTATAGCATGCAGAACCTGCGCAACGGCCTCTCGCCAACCAACCCCACAAAACTGTCGATCACTGAGAACGGAGAGTTCAAAAACAGCAGCTGCTGATTTAGTCAGACAGTGTGAGATGGTGTTATGGTCACACTCTCTCCATGCACACAGACCAATTACCTGTGGCTCTACAAGGAATGTCTAGATATTAATGTAAATAGCTTGTATCTTGCATTGGTTGTGTACAGAGATGATACTGAAAGACGTGTCTTTTGAAGACGTGAACAGGGGGATCAACTGTTGTCATGAAATAGCGAATTGTTGTTTTATAAATGACATTCCCATATGCAGACAAATGCAGTTTTAAATAGATTTGAAGTATTCTCTAATTAAGAGATTATATATTGAGTAGATGTACATATCAAAGGGGTTTGTTTCAATAAATAAGCACATAGTGAGCAGTTATAGCTCTAAAAACATAGTCATGATAGGAATGGAAGGGCAAAATAAACCAAAAAACGTTTTATGCACTGTTTTTCTAACCctactttttaaaaatatttttaactTCTGTTTTTGTCGTCTTAACCTAGGGGTTGCATTGGTTTTGATTGTCTGATTTTGAGTATATTGGGACTGCTGCTTTTGCCCATTGTTAGCTGAAACCATAGGCCTTTGAGTTCAGGTTCTTACGGCCTACTGGATCTTCAAAACAAAGTGTCTGCTCACTCCCACCTTGCCACAGAATAGCAAATGTTATTTATTTCTGTACCTTCTACTGGCACGCCTTCAAGATCCCATGAGAAGATGTTCAACATGACAGCCCTCCTGACTTTGTACAATTTTCTATTTCATGTCAATAACTACTGTTTAAGAGTCTGTTTTCTGTTCTCACCCACCCAACCTCCCCCTAGGCACACACTTTTTTGTTGCACAAAAATCTATGAACTGGTGAATGTCAATGATAGCTTATGTCAGTTGTTGAACGTTGTTGAGAATAAAAACTGCCTGTAACATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831250 lncRNA downstream 42789 62139885 ~ 62142953 (-) True G731861
TU831142 lncRNA downstream 138476 62045035 ~ 62047266 (-) True G731764
TU831144 lncRNA downstream 197742 61941991 ~ 61988000 (-) True G731765
TU831090 lncRNA downstream 311826 61870180 ~ 61873916 (-) True G731726
TU830989 lncRNA downstream 314187 61710897 ~ 61871555 (-) True G731629
TU831391 lncRNA upstream 130273 62361693 ~ 62362031 (-) True G731994
TU831438 lncRNA upstream 166819 62398239 ~ 62398459 (-) True G732041
TU831538 lncRNA upstream 239501 62470921 ~ 62471148 (-) True G732140
TU831743 lncRNA upstream 383391 62614811 ~ 62615105 (-) True G732337
TU832351 lncRNA upstream 633194 62864614 ~ 62865918 (-) True G732910
LOC110530961 mRNA downstream 568 62165849 ~ 62185174 (-) False LOC110530961
XM_021613226.2 mRNA downstream 40117 62067997 ~ 62145625 (-) True LOC110530303
XM_021613225.2 mRNA downstream 121721 62049903 ~ 62064021 (-) True LOC110530302
XM_021613222.2 mRNA downstream 151749 62004172 ~ 62033993 (-) False LOC110530300
XM_021613235.2 mRNA upstream 68477 62299897 ~ 62302542 (-) False LOC110530306
XM_036985938.1 mRNA upstream 68477 62299897 ~ 62311759 (-) False LOC110530306
XM_021613234.2 mRNA upstream 68477 62299897 ~ 62312493 (-) True LOC110530306
XM_021613236.2 mRNA upstream 281884 62513304 ~ 62607766 (-) True LOC110530307
XM_036985949.1 mRNA upstream 651530 62882950 ~ 62967485 (-) True LOC110530309
TU831229 other downstream 562 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 137623 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 4321865 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 4339053 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 4374320 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 2758881 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 3286747 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 3869676 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 3962234 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 4327776 66559196 ~ 66560517 (-) True G737449

Expression Profile