RNA id: XM_021613234.2


Basic Information

Item Value
RNA id XM_021613234.2
length 1713
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110530306
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62299897 ~ 62312493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGTTGAATGATGCTGTACTTGACTACATTTCCTTATCAAGATTCCAGTTGCATCATGGGAAAGCGCGAAGTTCAAATCCACTTCCTGACTTTGCCGGTGTTATTTTTTTCAGTGATGGAGGAACGAAAAAGCACTGAGGAGACCCCACGCAACAATGCCTTGGCACAACGAAGGAGCAAGAGTTACAGGCAATCAATGCGAAGCTGTGTTGAAGCAACTCATCTGACATACACATCAGGCCTTTTGACAGCTCTAAGAATACCAAGAAGTAGAAAGGCTCCAAAGTCATGTGATATCACAAAACAGGTTGACCCAGACCAAGTAGCACTTCTGGTGAAGAAGGAATGGCAGCTGTCGTATGTCACACCTTTGTACCAGTTCAGACACACTCAGTTGAAATCCTACTCAAAGCAACTATCAGCTTTCATGGTATCAGAGAAGCAACAGGGCCTGGCGATTGAAGTTGGTCAGGAGTTGGGCTTCAAGGTCAATTTTTCTGTGGTCCTTGGGTTGGCAGAGACGGATAAAGATGCTGAGACAGTTTTCATACAGATTCTCTCCAAACAAGTGTTTTCTGCAAAAGATGCTGCTCCGAAGGTTGTGTGGAGTGGCTGGCTGACCTGCGTCAACGGTGACTTGGATTATCTCCGATCACTACCCCTGGAATTTGTCAGTTTGCCTTTGTTCTGCACCAGAGGACCAGAATCGCTCACAGTGTTGGTCAAAACCTGGTTTGAAAAGACATTTGACTGTTGCTTCGGCCCTCTTGGTATCAACTCTACCAACCTCCAGTGGCTCGCATCCCTATGGACTGGGTGCCACCCCACCATCAACATCCAGTACCTGAAACTGGTCTGGACTCTCCCAACACTACCCCCTATGGACGTTACGTACACCGTCCACCCACAAGATGCCTGGGAGCTTTGGGACAGCATGCGGCAGGTTGACACGACAGAGGACAGCATCAGCATTGATGAGGTCACCGGGTTCATCAAAGGGCTGCAGTCACACTTCTTCAGGCACTTCAGGATAGACTTGTCCGCTGGGTCACTGATGCAGATCTCCACGGCTTTGGGTTCTTCTCACCATAGTGGAAAAATCAAGATTGCAAGCCCTAATTACATCCCCACCATCCTGCAACTGCTGACAGAATGTGCTCTTCTGAAGATGCCAATCTAAGCAGACTGTCTTTGACATCACAAAtcaatgtttgtttgtgttttgtaAAATACCTGTATAACCCCAAAATTACTGTCCATATGAAATTAAACCATTTTACTTTTTTTAATATATTCATGTATTGTATGAAAAGGCAAATGCATACATTTCAAAATAGCTACGCTTTTGCTGATTGTGTATTGCCATTGTTCTGTGGTTTCAGTCACTCTAGATATTATTCACTACAAGCGCAATAGTGTAGAAGTAAATGTGTTACAGCTTAAACTTGCAAATGTTGGTTTTGTCAGTGTGGGGTGATAGTTGATTAATCAGGTTTGATACATGGTAAACCGTCAAGTAACTTGGGCAGTTCTGAAGATATCATTGTTTCAGTCCAGATACAGTAATTGGCAAACTGTAAGAAAGCCTGGTGATTTCCTAAACGGTAGAGATGTAACAACCAAAAAGAATAGTACCTGTAAATACATTTCCATTTTCAAAAACAATTGTTTGATGAGCTTAAAGTTTGAAATAAAGTGTTTTTATTAACA

Function

GO:

id name namespace
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11504 CENPL; centromere protein L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831250 lncRNA downstream 156944 62139885 ~ 62142953 (-) True G731861
TU831142 lncRNA downstream 252631 62045035 ~ 62047266 (-) True G731764
TU831144 lncRNA downstream 311897 61941991 ~ 61988000 (-) True G731765
TU831090 lncRNA downstream 425981 61870180 ~ 61873916 (-) True G731726
TU830989 lncRNA downstream 428342 61710897 ~ 61871555 (-) True G731629
TU831391 lncRNA upstream 49200 62361693 ~ 62362031 (-) True G731994
TU831438 lncRNA upstream 85746 62398239 ~ 62398459 (-) True G732041
TU831538 lncRNA upstream 158428 62470921 ~ 62471148 (-) True G732140
TU831743 lncRNA upstream 302318 62614811 ~ 62615105 (-) True G732337
TU832351 lncRNA upstream 552121 62864614 ~ 62865918 (-) True G732910
XM_036985931.1 mRNA downstream 24663 62185742 ~ 62275234 (-) False LOC110530304
XM_036985930.1 mRNA downstream 25969 62185742 ~ 62273928 (-) False LOC110530304
XM_036985929.1 mRNA downstream 43209 62192546 ~ 62256688 (-) True LOC110530304
XM_036985926.1 mRNA downstream 43210 62185742 ~ 62256687 (-) False LOC110530304
XM_021613236.2 mRNA upstream 200811 62513304 ~ 62607766 (-) True LOC110530307
XM_036985949.1 mRNA upstream 570457 62882950 ~ 62967485 (-) True LOC110530309
XM_036985951.1 mRNA upstream 896539 63209032 ~ 63239830 (-) True LOC110530312
XM_021613248.2 mRNA upstream 979950 63292443 ~ 63294703 (-) True LOC110530314
XM_021613250.2 mRNA upstream 1163299 63475792 ~ 63494724 (-) False LOC110530317
TU831229 other downstream 114717 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 251778 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 4436020 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 4453208 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 4488475 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 2677808 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 3205674 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 3788603 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 3881161 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 4246703 66559196 ~ 66560517 (-) True G737449

Expression Profile