RNA id: XM_036985949.1


Basic Information

Item Value
RNA id XM_036985949.1
length 7808
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC110530309
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62882950 ~ 62967485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCACTGTTCAATGGCTGTGGTGGGGCACTAGACTGACTATTCATAAAAGTGCCTGAAAAATACAATTAAGGAGTATGGACAGTGCACACAACTCGACGTCGATGGTGAAGAGTGACTGCCTTGGATAGAGAGGTTTCCTTTCTTTACTAATGTGTGTAGTAGGGGCAGGGTTAGTGATGTCAGTCTGAGAGTAATAGATAAAACGTTTCAGCGCGTTGGTTTGATCTTCTGAATAGGCTATGGAGGAGAGCGAGACTGGCGGTTCATCAGCGCAGAAAATATATCCACAATTTCAAATGGGCATACAAGAGGACTTTACGCGCGCTTGAAGGTGATTTAATGAACAATTGTTTTATTTGGAGTCTCTCTTAACAGGACCAGCAGAGCATTTAGTCTGATTCCCATTGATTTGCTCTTGCTTCTTGTCTCATACCTTgctgttacttttttttttttttaccaaatacaGGGAAAGGAAATAGCAAATAAATAACAATAGACAATAGTTGATGGTTAGGTTACTTATATTTCTGCCATTGTGTAGCCTATGACTGCATTTAAGGTTTATCTTTAAATAAAGCTTACCTTTACTTTATGTGACTTCATAGTATAGTCATTGAATGAGAAATATTGGCTTAAAAACTAAAAACCTCAGCCAGCTTGTTCATTGTTTTGGTCACCCCAGCATCCTTCTCACAGGGTGAATTTTAAGTTAACAACAACGGGCACTATCGAAAATAGCGCACGAGGAGATTGGTGGCAAGACCTGAAGGCAAGACATGAACTAACCTTTATTTTGCGCGGAATGGATGAAAACACTGAAATCATCACGTGAATGATCCtatatttaaaataataaaaagATAAATCCAACCAGGGACAATAGTCTTCCAACTGAATTCTATGGACAAGCAGATCGACTGAAAGTAACCATATTGCACAATTTCATTCCAAATTCAAAATTGATGCTGCAAAATACAGTAGCCTAATGACAATACTTTCATCCTATTCAAACAGGCGGTATTGTGGTAGGTTGCTCTGACCGTCACTTTCCCTTAAAAAGTGTCCAGTTCACAGTGCAGCAGGTTTTAAAGTCGAGTTGATGCGATGCGTGCAGTGGAGGCTAGACGAGAGGCAAGTTGTAGTTTTGTTTAGACCGGCGAAATAGCCAGAAGCTTTTACAAACTAAATATACATTGAACCTCCATATGCAACAGCCTGAAGATTTTGCACTCAGTCAATGAAACATACTGCTACAGTTCTCTATTTGAGTGCACTGACAGGCTTCTATTTAGCTACTTTTTGAAGTCTGGAAGGAAAACTGCCATCTTGATGAAAGTATGCATGACACACCTGCCTTGACTGCATTGCACTAAATAGACCAGTCCAAACAAAAATAGGCAATTGCTTTTGCAAAAAATAGGATACCtgttaaaaaaattatatatatattataatactaTTAGTTGAGAAATACACAGTTACCCACTTATCACTAGTTTATGTAATGGGGAATAGGGGGTTTAATCACATCTGATCTTGCCGCTGTATTCAACTTTATATCGAAGAAGGCAGGGTTCCAGAACTGAAAACATTCCAAAACAACAATTCCAAATCTAAACTCCAAAATGTTGTTTGTTAGACTACTGGCTGTTGTCCTCATAATGATCAACACATGGCTGCTAAACTCTGCTCAATCAGATCATATCCGAAGATACAAACGCGCAATGGCTCAGAGAGCTGACAGTGAGCTGGCTCACTTAGCAAGTGAACAGTGCAGGTCCACCAGACAACTGAGACAAGCAGCATACTCAGCATCAGTTCCACATCTCCCTCCAGTGGCTCACCCAAGGAGATACATCACAAGGCAAAGTGGTCACTATCATATAACTCATCTTGAGGAGACCTCCTGTTCAGGTGGGTGCAATTCTGATGCTAATTCTAACCGGAGACTGGATAGTGCCTCTCATTGGGGCAAAGGTGAGAAGAAGGTTAGTCGGGGAAACTCAGAGGCAGTGATACCCAAAGACAAGGAGGATAGACATGTTAAGATTCTAGGGATGATCAGTTCTCCTAACCCCAACTTCAACAGAAAGCCTCCCAGTCAGGCTGATGTGACAGTGGACTCAAGTAGTGGCAATGACAAACCAGAGGTTGATGGTGGGCGCTCTGAGGGCCCACACAAGCAGCTGCTGCTCAAAAAGCAGCAGAGAGTTCTGACTGGAAGGGTCCGCCGTACCCTTACAGTCTCAGATGGTGAAGACAGTTGGGCAGCTTTCCCTGAGAGCGTAGTAAAGTCCCGCAGGATATTTTCTACATTCCGGCAGCACAGTGACTATTCTGCTGAGATTGAGGACTACCCTGTGGAGCAGGAGGGACCACCTAGCCGCGCCAGCATGTTGTGGGGTGCCCAGATTCCAGACGTCCCCCCTAAGTGGATGTCTGCTTTGTACTTTAGTGGACAGAAGGAACAACTGAGGGTCAATCCAGCAGCTGGCATTGAGCTTCCTCGGGCTAAGTTCAGTGTTGAACTGTGGGTCAACCCAGAGGGTGGGCAGACTAACCCAGCCATCATAGCAGGGGTTTTTGACAACTGCTCCCACTCCTTAAGTGAGAAAGGATGGTCCGTAGGTATTCGCACAGTAAAGCCCGGTGGAAGAAAAGATGCCAGATTCTTTTTTACACTCCGTACAGACCGAGCTCCCAAAGCTACGACTATCTATGGGCATCAGCGCTACCACCCTAACTCCTGGACTCACCTGATGGCCAGCTACAATGGCCACAGGATGAAGCTCTACATAGATGGTGCCAAGGTTGGGGAGAGCAGTTTGCAGTCTGGTAACCTCTACAGCCCGTTCATGGAGACTTGTCGAATACTTCTTCTAGGTGGGGACCAGTCAGACCTTGGGCACAACTTCCGAGGGCACATCGGAGGCATTGTGTTATGGGTGCTCCCCCGCACTCACGAGGACCTCCTTAAAGGGCCTTCTCGGATTGATAAGAGGGAACCAAACCTCGCTCTCTGGGCGGACTTCTCCGAGATAGAGCAACAGTGGAGTCCTCATAAGGAGGGCTACCACCCATCCATAGTCATCATCCCTATCCCTGAGCAGGAGCATGTGTCCCCCTTTCTGCCCCCTCCCTGTGGATTAACAACCTGTGACAACACAGACATCATCCTAGGCTACAATAACCACTGGCAGCTGCGCACAGAGAAAAGGATCCGCTACCGTATTGTCAACATCTGTAACGATGACGGAAGTCGTCCCACTGTCTCTCAGGCCCAGATCCAGATGCAGCACCAGGCACTTGTCGAAGCCTTCCAGTCCTACAACATCAGCTTGGAGCTGAGCACGCATAATGTCCAGAATACATCTGTACGCCAGCGCTTCATCCTCAGCAACTGCCGGATCAGTAAGATTGGTAACAGACACTGTGACGCGGAGTGTGACCACCCACTGACGGGCCacgatggtggggactgtctgCGTCTGGGGCCCTGCTACAACTGGAAGAGGAGGGACGGGGTCTGCAACACAGAGTGCAACAGCATCCACTACGACTATGATGATGGAGACTGTTGTGATCCTGAGGTCACGGATGTCCTGAAGACATGCTTCGATCCAGAGTCCCCAGATAGAGCCTATATGAGTGTGAAGGAACTGAAAGAGTTGTTACACCTGAGCAGCACAGACACCCTAAATGTTTTCTTTGCCAACAACTCAGCCCGTGAAGAGTTAGCAGGGGCTGCAACCTGGCCATGGGCAAAGGAGGCCCTCAACCATCAGGGTGGAATGGTGATGAATCCATCCTACTTCGGCACCATCGGACACAATAACACAATGATCCATGAGATGGGCCATATCTTCGGACTGTACCATGTCTTCAAGGGGGTCAGTGAGCGGGAGTCCTGTGATGACCCCTGTCAGGAGACCACTCCCTCCATGGAGACAGGAGACCTATGTGCAGACACGGCCCCTACACCCAAGTCTAAGGCCTGCCATGACCCTGGTCATGTCAATGACACCTGTGGGATAACGCTCTACCAGGACACACCGTACAACAACTACATGAGTTACACAGACGATAACTGCACCAACCATTTCACACCAAATCAAGTGGCTCGGATGCATTGTTATATGGATCTAGTCTACGAGAACTGGCTGAACAACAGAAggccctcccccatccctctcaaGCCCATGGTGATTCGACAGAGCTCAGACTCGGTCTCCATTCATTGGCTGCCACCTGTAAGGGGGCCACTTCATCAAAGTTCCCCTACAGTGGATAGTGTAAACTGCAGGGACTGTGAGGCAGATGGTGTGTTCCATCAGTATGCCTATGAGGCCACCTCGCCCCGGGTCTGTGACTCCTCCGGATACTGGACACCTGAAGAGGCTATTGgcccTCCAGATGTATACCAGCCATGTGAGCCCAGCCTACAGGCCTGGAGTCCAGAGCTCAGCCTGTATGATGCCAATGTGACGTCTCCCTGCCCTGAAACAGAGGGCTGCGTCCTGATGCTGCGCTTCCTCCACCCTGTGGTCCCTGACAGCCTCACTGTGTGGGTCACATACGTCTCAGCCGATAACCAGGCAATCGCCAACATCGAGCTAATAACAGACACAGACGAGTCTCTTGACATGGGTCCACAGCACGTCTTCTGTGATGTTCCCCTCACTCTACGTCTGCACACCGGAAAAAGGGTGGCAGCTGTCAAACTGAGCACCTTTGATGAGAAGATGGAGATTGATGCTATCCTGTTCACTTCTGGCCCCCACAATCCTCTCTGCTCCAGTTGCCAGCCTCTGATCTACCGAGTTGTCAGGCAACCAGCGTTTTCAGGCGATCTGGTCCAACAAACTCTGCTTACATTTACAGACAGCGACATTGTAAAGGACAAggaataccagtacagagttCAGGTGGAAGCAGACGGTCTCCTCAGTGagctctccccacctctcctctacaCCCATGGAGCTGCCTACTGCGGAGATGGACTACTCCAGGGgacagAAGACTGTGATGATGGCAATCTGTTGGATGGTGATGGCTGCTCTAAGAAGTGCCACATGGAGTCAGGCTTCAATTGCAATGATGAACCCAGCCTGTGCTACGTGTTTgagggtgatggtgtgtgtgaggtgtttGAGAGGGGTTCCAGCGTACAGGACTGTGGTTACTTCACACCTCATGGGTACAGTGACCAGTGGGCTTCAACCGCAGCAGCTTCCTATCAGGATCAAAGCAGCTGCCCTGCCCTGGCAGCCACCGGAGAGCCCTCACTTAGCAAGCTATGCAAGCCCCAGTACCTGGAGATGAATGAGAAGCCGTCACTTGACATATGGTTTCCATGCACGGCCCAGTCATACACTCAGACCCACTATGGCGAGGAAGACACAGTATGGCTGAAGGTGGGATTTGCGCAACCTGGAGTCGCCACGTCTGTCATCATCTATCTGGCCTCAGACGGAGCCTGGCCTGGAGAGCAGTGCAGGAAATCAGTCTTCATCCAACTGTGTGATACTGGTGGCAGAAACCACTCCTTGGGTTCCTTTGAGCTGTCGTGCCAGCAGAATCCCTTGGTGGTGAACGTGACACACAACCTGAGTCAACCCTTCTTCCTGACTACCGCTGTCATCCTCAACTTCTCCTCACCCTTCGTTGCCGTGACAGGAGTCGCTCTGCGCACATCATGTCACTTCAGCGCCTTTGCCCTCACTAGCTGTTCACGACGGCCCTGCCAGACGGACACATGCAGTCCTCCTCAGCTGGAGCATGCCTCTCTCACCTGCAGCACCGGGATAGAGACGACTGAGTCCTCTCACTGCACTGTCCACTGTCATCAAGGTTTTACCCTCACTGTGCTCAGTGGCAAGGGCCATCCACCCTTTCAGCGAGAAACGGAGCTTCAGTGTGTACATGGAGCATGGGACCGTGTTGTGAGCTGTCAGCCAATCGACTGTGGCCCCCCTGACCAGTCTCACGTCTACTTTGCTGCCTTCAGCTGCCCCTGGGGCACAACATTTGGCAAGCAGTGCTCTTTCACCTGCAACCCCCCCGCCATACTCCAGGGAGACAGTGATAGGTTGGTGTGTTTAGATGATGGTCTATGGTCCTTCCCTGAAGCCTACTGTAAGATAGAGTGCCCAGAGCCTCCAACAGTACCCAATGCCAAGCTCCTAGTGCCCCAGTGTGAAGGTACAGGGCATGATGTGGGTACCGTATGCCGTTACAAATGTAACCCAGGTTGCTATGTTACTGGCAGCCTAAAAACAAAGTCCAGAAAAAGGTTTCTGAAGGTGGAGTGTGTAGAGGGGGGCCAGTGGGAGGAGGGGGGCTGTGAACCCATTCCCTGTCCATCTCTACCTGCTGTCTATGAGGGCATGTTCACCTGCACCAATGGCAGGCACTACAACAGCCTCTGTACCCTCCAGTGTCCTCATGCCTCGGAAAACCACACAATTCGCTGCACTAAAGATGGAGAGTGGACAGAGAAGTTCACAATGTGTACAAGGTTGAATGAAGCCTGCCCACCTCCCCCTGATGTCAATCGGATTCAGTATGCCTGTGACGAGGGCTTCAGTGTTGGTGCAGTTTGCTACCCAACATGCAGTGCGGCCTTGCATGACCCAGTGGTTCTAGCCAATAGCACCACAGCAGACAGCGTCAAGCACTGGATGCTGCCAGGCAGGGTTCAGGGCATTGTTTGCACAGGAATGACGAGGTGGCATCCTGACCCCAAACTGATCCACTGTATCCAGTCATGTGAGCCCTTTGGGGGAGATGGTTGGTGTGACACCATCAACAACAGGGCCTACTGTGAGTATGATGGAGGGGACTGCTGTCCATCCACCCTCTCAACCAGAAAGGTCATTCAGTTTGGGGCCGACTGTGATCAGGATGAATGCACTTGCCGTGATCCAAATGCAGAGGAGAACAAGAGCAAAGCCAAATACTTGGAAGCAGGACTGCTATGAACGATGGAACGGGATAGGCCAAGGCTGGCTCACAATGAAACAACAAGATGAACTTCACCCCTGGTCATGATGTATTTCCAGTTTGTTTTCCTATTAGAGAGCAATGAAGGCTATCTCTTTTAaccaaaaataaaaacagtgtttcaAGATTGTAGCTTTTAGGATTTCAACACAATAAATAATCTGTAAAGACGACTAACTTGTATAGAATAATATATTTGGGAAATGTCTAATGTCGCATGTAGATGTAGTTACGGAAGTCTACAGTATTTCAACATCATATCACATAATACACATGTAAGCATATCATAGGTACTAACTTAACACTTTATGTTTAGAGAGTTGTAAGATGTAGCAGTTTTCTCAAGAAATATTCTACCTAAGTGTCGTCTTGTTCTGTGTGATACTATACTGTATTTTACTCTTGATATTGAATAAACTGTAACTTTGTCAGATGCTGATTTTATctaatttgtttgtttttgggtCTCCACACTCCTCTGAACATAAGGGAAACACATACAGTACTATCTGTATCTCTTGCCCGTAagaatatacactgaacaacatgcaacaatttcaaatcaaatcaaactttatttgtcacatgagccaaaTACAGTAGgtttagaccttaccgtgaaatgcttacttacaagcccttaaccaacaatgtagttcaagaaagagttaagaaaacgTACCAAATAAACAAAGCTATAaggaaaaaatatttaaatatattaattaggccctaatctatggatttcacatgactggaaatacagatatgcatctgttggtcacatataacttttt

Function

GO: NA

KEGG:

id description
K08647 PAPPA2; pappalysin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU832351 lncRNA downstream 17032 62864614 ~ 62865918 (-) True G732910
TU831743 lncRNA downstream 267845 62614811 ~ 62615105 (-) True G732337
TU831538 lncRNA downstream 411802 62470921 ~ 62471148 (-) True G732140
TU831438 lncRNA downstream 484491 62398239 ~ 62398459 (-) True G732041
TU831391 lncRNA downstream 520919 62361693 ~ 62362031 (-) True G731994
TU832444 lncRNA upstream 31747 62999232 ~ 63079193 (-) True G733000
TU832671 lncRNA upstream 224803 63192288 ~ 63192491 (-) True G733215
TU832687 lncRNA upstream 234765 63202250 ~ 63208657 (-) True G733226
TU832729 lncRNA upstream 296269 63263754 ~ 63263967 (-) True G733260
TU832730 lncRNA upstream 296559 63264044 ~ 63264455 (-) True G733261
XM_021613236.2 mRNA downstream 275184 62513304 ~ 62607766 (-) True LOC110530307
XM_021613234.2 mRNA downstream 570457 62299897 ~ 62312493 (-) True LOC110530306
XM_036985938.1 mRNA downstream 571191 62299897 ~ 62311759 (-) False LOC110530306
XM_021613235.2 mRNA downstream 580408 62299897 ~ 62302542 (-) False LOC110530306
XM_036985931.1 mRNA downstream 607716 62185742 ~ 62275234 (-) False LOC110530304
XM_036985951.1 mRNA upstream 241547 63209032 ~ 63239830 (-) True LOC110530312
XM_021613248.2 mRNA upstream 324958 63292443 ~ 63294703 (-) True LOC110530314
XM_021613250.2 mRNA upstream 508307 63475792 ~ 63494724 (-) False LOC110530317
XM_021613251.2 mRNA upstream 508307 63475792 ~ 63494725 (-) True LOC110530317
XM_021613254.2 mRNA upstream 580094 63547579 ~ 63561814 (-) True kiss1ra
TU831229 other downstream 697770 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 834831 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 5019073 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 5036261 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 5071528 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 2022816 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 2550682 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 3133611 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 3226169 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 3591711 66559196 ~ 66560517 (-) True G737449

Expression Profile