RNA id: XM_036985951.1


Basic Information

Item Value
RNA id XM_036985951.1
length 4723
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110530312
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63209032 ~ 63239830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCGGAAGGGGATTTAACTACTTGAGGGAAAGGCTGTTGCTGCAGGAGCCACAGAGGCATTGGTTATAAGGGCCCCTTCAAACTCATGCCCTGAGCTTGTCAacaggtgtcagagagagaagaaatagaGTGACAGATTCTCAGGCTTTCAGAAGAGGGAGTCACAGGGAACTGCAACGCCATGACCACTAGACTTCACTGGCTCACAAGAGCCCTATGCCTGATAAGCATACTGTGCACTGTCACTTCCAAGTATGTGACAGAAGATTATTCATCCCCTGCTGAGAAAGAAGTCACCTTCAGCCACGTCTATAAGATTGACCTGGCCAAGAGCCCTGAGTGTAAACTCGCCTTGCAGACCCTCCCTTCCCAACAGGACCAGTTTTCAGGCCTGCAAGAGCTGGAAGGGGGCGCTACTCTGGAGGGGGAAAACAACATCGTTTTCAGGCACCAAATCAACCTCAAGACCCCAAAGTGTGACTGTGATGAGTCGGAGAGCTTTACGTCTCTGCTGTACAGAGTCAACgggctggaggaggaggtggaacatCTGAAGAGTCAGTGCTCCCAGGGCTGCTGTGGTGGAAAAGGTGGTGGAGCAGGAGGTGTGGACACTAGCTGTAGTGGCCACGGGACCTACCAGCACAACACCTGCAGTTGTCAATGCAACCCTAGCTGGGAGGGTCCTGACTGCTCCATTTCCACCTGTCCTGATGAGTGCAACGACAACGGCCGCTGTGTGGATGGCAAGTGTGTCTGCCACGCTGGCTATACGGGGAGTGACTGCAGCCAGCTGATGTGCCCAGGCGACTGCAACGATAAGGGACACTGCGTGGACGGCAAGTGTGTTTGCTTCAGCCACTTCACTGGCGAGGACTGCAGCGAACAGAAATGCGATCCTGACTGCATCCACGGCACCTGCGTGAACGGAATGTGTATCTGTGACGAAGGCTTCTTTGGGGAAGACTGCTCTACAGTGTCGGGCCCTAACGGCCTGCGTCTGGTAAGGGTGACTGATAATTCTCTGTTGGTGGAATGGGAGGCTGTGAAAGCAGCAGAGTACTACATCCTGACCTGGCACCCTGAGGGCAATGAGGCAGAGCTGGAGCAGTTCACCGTGCCCAACACAGAGACCTCCTACCTGATCACAGGACTCAGCCCAGGTGTCACCTACATAGTGCAGGTGTACGCTGTCATCAAGGAGATCCAGAGCGAGGGGGACAGGATCGAGGCGACCACAGAGGTGTCTGGTATTGATGGTATCCGGGTATTGGGCCAGACTGAGGACTCTATCCAGGTGGACTGGCAGAACCCTGCAGCACCTCTGGACCATTTCAGACTGACCTATGCTAACCCTGAcgggcaggaggaggagcagaacGTACCAATGAGTGCAGAGGCCAGGACCACCCACACCATCGTAGgaCTGCAACCTGGCACTGAGTACCTCATCACAGTGCAAGGCATCAAAGGGACCATCGAAGGGAAAGCCTCCTTCGCCACCGGGGTCACAGATCTTGACGATCCTACTAACCTCTTGACCAAAGAAGTGACAGAGGATACCGCTACCGTGGAATGGCAGAAGGTACAAGCAGAGATCGACGGCTACGTGATCAGCTACAGCTCTGCGGAGGGCTCCAGTGGGGAGATATCTGTTGGGCCAGACAGCACCTCATACAGGCTGACTGGGCTGAGGCCTGGAGTTATCTACACAGTCTACATTGGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAGCTCCACAGAAGCTGAGACAGAACTAGATGTTCCTACTAACCTGTTGACCAGAGAAGTGACAGAAGACACAGCGACAGTAACATGGGATAAAGTCCAGGCTGAAATCGACGGCTACCTGATCAGCTACAGCTCTGCTGAGGGCTCCAGTGGGGAGATCCCTGTTGGGGCAGACAGCACCTCATACAGGCTGACTGGGCTGAGGCCTGGAGTTATCTACACAGTCTACATCTGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAGCTCCACAGGAGCTGAGACAGAACTAGATGTTCCTACTAACCTGTTGACCAGAGAAGTGACAGAAGACACAGCGACAGTAACATGGGATAAAGTCCAGGCTGAAATCGACGGCTACCTGATCAGCTACAGCTCTGCTGAGGGCTCCAGTGGGGAGATCCCTGTTGGGGCAGACAGCACCTCATACAGGCTGACTGGGCTGAGGCCTGGAGTCATCTACACAGTCTACATCTGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAACTTTGTTGACGCTGAGACAGATTTGGAAGCTCCTACTAACCTGTTGTCCAGAGAAGTGACAGAGGACACAGCTGATGTGTCGTGGGACAGACCTTTAGCGGACATTGATGGCTACCTGATCAGCTACAGCTCTGCTGAGGGCTCCAGTGTGGAGATCCCTGTTGGGGCAGACAGCACCTCCTACAGGCTGACTGGGCTGAGGCCTGGAGTCATCTACACAGTCTACATCTGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAGCTCCACAGAAGCTGAGACAGAAATTGACGCACCAAAAAACCTGAAAGCATCGGATGTTAAACTGAATGTAGCTACCCTGACCTGGACTGCTCCCTTAGCCAGAATCGATGGCTACATCCTCACATTGAGAGCTGAGGATGGCAGTTTGAAGGCTGTGGAGAAGAAGCTGAGGGCAGGAGAGAGCAGCTTTGCCTTATCGGGCCTGGAGAAAGGAAAGAActacattgttaccctccttgctTACAGAGGACCAAAGAGGAGCAGAGTGATAGAGATCACATTCAAAACAGTGGGTTTGTTGTACCCATTCCCCATGGACTGTACTCAGATTAAGAAGAATGGTAACGTGGCAAGTGGAATCTACACCATTTACGTCAACAGTGATCGCACCAAGCCCATGGAGGTGTACTGTGACATGGACACTGATGGCGGTGGATGGGTGGTGTTCCAGAGACGCAACAATGGACAGATGGACTTCATGAAGCGCTGGAGACAGTACATGGCTGGTTTTGGGAACATGACTGATGAATTTTGGCTTGGTCTGGACAATATCTATGAGCTGACCAATACTCCCACGCAGTACGAGCTGCGAGTGGACCTTGGTGTGGGTTCAGAGAAGGCCTATGCTGTCTATGACAACTTCAAGATAGCCCCGGCTAAGCAGAAGTTCAATCTGACCATCGGTGAATACAGTGGAACAGCAGGCGATGCCATGAGCTACCATCAAGGTCGCCCCTTCTCCACGGTTGACAATGACAATGACATTGCTCTTGGTAACTGTGCCCTGACACATCGTGGTGCATGGTGGTACAAAAACTGTCACCTTGCCAACCTCAACGGCAAATTCGGAGACAACAGACACAGCATGGGTGTGAACTGGGAGCCATGGAAGGGTCACCTGATGTCTCTTGATTTCACTGAGATGAAGATTCGGCCTGTGGGCACTGCCAGGAAGAGGAGGTCGCTTAGAAGCAGTACAGCTCCCAGAAAATAGTCCCTCTGATGAACTAAAGCAGTCAATGGGAACCTCATTACAAACCAGGCAAAGTAGCTAGAACCTCAAACCAGGAACATCAATCTATCTCAAGACTATTGTAACTTACTTTATGTTAACATATCATATGGCTGCAGCCATAAACGTCTTTATTTTTCATAGGATATTTGTATTATTGGTTTATTTCATATATATTATGAACAAGTGAACTGCAACTTTCACTGTATAGTGTTATCACATGGGCAAAGTAAAAGGATTTCGTATCTTGGCTCTGTCCTAAAGCGGCATTCCTCGCAGACGTAGATTCTTAGCAAATGACCTCTGTCCTATTGTACTGTATATGATTACATTTTATAGGCTGGCTCCATGGCATAAAACAGTCACCATATTCATAACACTGTCTGCTCCTATTATGCATAATCAGTTAGATCACCAAATGATACCGTGTTTTTAGAATAGTTATACTGCTCTTGTTCACATTCATAACATAGCATAGACCCTGACTCTCTGTTCTAAGTTCTGGTCTCTGGCCTACCCAGCCTACAGAGTTAGCTACATTTCACATTTCAGATGTTATGCATAAGAAATAGAATGTATGACATGCTCCTTTGTAAGATTGTATTTTCAAGTGTGTATTGTAATTGTGTCGTTCCACGAAGAGTGccttttgcgtccctttgatattttaagtagaaattaaAAACCTgctatattaaatgaagtgccctttaatatagaccacatggagaattcaatcaaTCGGATTCCTAAAATGAATATAGGCTTGCTAAAAtgccaaaattcagcattttgacatgtccctccatccaccttgtgtcacttctaggaagattttaacccacttaatcccAAAAGGTCTCCaagtttcaccatcattgtaaagccctactTAAAGTGTTGCTAtgacagtcatttctgaagacTATTAtgtatttcatgtgattagtgattcatttacatcTGTCCCTCGTTTTAAGGTCAACactgttatgtgaactgaacaCGGTTTTTGCAGAAGAAACATTGAatatctaatagtcaaatcatagagtAAAATATTTTattggccattttctggtgttttgtggtgtcAAGCATAACATGTCAACCTTTTTACCCATAGATTGACAGGCTATAAATGTTTCAACAAGTTCA

Function

GO: NA

KEGG:

id description
K06252 TN; tenascin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU832687 lncRNA downstream 375 63202250 ~ 63208657 (-) True G733226
TU832671 lncRNA downstream 16541 63192288 ~ 63192491 (-) True G733215
TU832444 lncRNA downstream 129839 62999232 ~ 63079193 (-) True G733000
TU832351 lncRNA downstream 343114 62864614 ~ 62865918 (-) True G732910
TU831743 lncRNA downstream 593927 62614811 ~ 62615105 (-) True G732337
TU832729 lncRNA upstream 23924 63263754 ~ 63263967 (-) True G733260
TU832730 lncRNA upstream 24214 63264044 ~ 63264455 (-) True G733261
TU832731 lncRNA upstream 25241 63265071 ~ 63265277 (-) True G733262
TU832732 lncRNA upstream 25461 63265291 ~ 63265581 (-) True G733263
TU832733 lncRNA upstream 26811 63266641 ~ 63266941 (-) True G733264
XM_036985949.1 mRNA downstream 241547 62882950 ~ 62967485 (-) True LOC110530309
XM_021613236.2 mRNA downstream 601266 62513304 ~ 62607766 (-) True LOC110530307
XM_021613234.2 mRNA downstream 896539 62299897 ~ 62312493 (-) True LOC110530306
XM_036985938.1 mRNA downstream 897273 62299897 ~ 62311759 (-) False LOC110530306
XM_021613235.2 mRNA downstream 906490 62299897 ~ 62302542 (-) False LOC110530306
XM_021613248.2 mRNA upstream 52613 63292443 ~ 63294703 (-) True LOC110530314
XM_021613250.2 mRNA upstream 235962 63475792 ~ 63494724 (-) False LOC110530317
XM_021613251.2 mRNA upstream 235962 63475792 ~ 63494725 (-) True LOC110530317
XM_021613254.2 mRNA upstream 307749 63547579 ~ 63561814 (-) True kiss1ra
XM_021614248.2 mRNA upstream 531853 63771683 ~ 63777609 (-) True LOC110530962
TU831229 other downstream 1023852 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 1160913 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 5345155 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 5362343 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 5397610 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 1750471 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 2278337 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 2861266 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 2953824 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 3319366 66559196 ~ 66560517 (-) True G737449

Expression Profile