RNA id: XM_021613248.2


Basic Information

Item Value
RNA id XM_021613248.2
length 1501
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110530314
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63292443 ~ 63294703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTGTTGGTGGGTTGGCCAGTGTTCGCCTGATAACTTTCCTTAGCATGCAGAGGAGCGAGTGTCTGAGTCACAAAGCTTTTGCGGGAGAGTTGATCATCATACAGTAGTCTCTCCGGCGATTTTAAAAGGTTTGGCTCGAAATGACGACCCAGCAGCCCCCTCTCTCCCAGGAGATTCTGGCTCAGTGTAACCAGCAGGCCATGGAACCATGGGGCTCCCGGAAGCTTCACCAGAGCCGCCAAGGCTCCATTTCCACCCTCCGCAGCTCCCTGTCTAGAgaccaacagcagcagcagcatcctcGGTACCCTCTATTACTCCCAAGGGGCTTCCTCCCTATCGAGTCCTCATCCAGGAGGCCCAATATCAGCAACCCAAACTCCCCTTTCATACGCCGGGACTTGGTCGCCCTAACCAAGCGTTTTTCTTTTGGCGGTTGGCTTCAGGGCAGTCGGGCCAGTTTCTCTGGTTTGCCCCTCCATCAGCCTGTCCAGCTAGAGAACACCTATAAGACTGAACCAGAGAAGGGATGTCTTTTTAAAGCCAGTAAGGTCCAGAAGCTTGTGCAAGCCATGCTGGATAGTTATCTGGATGGGGCCAGCTATAACGCAGCCTCAGGCAGCCATCTTAGCCAGATTCTGTCAGACATGGTGAAGAGCAAAGTGAAAGAGATGATTCCTCCGCGGTACAAGCTGGTGTGTCAGGTGGTGGTGGGGCAGAACAGGAACCAGGGTCTACGAGTGGCCAGTCGCTGTCTTTGGGACTCGCAACATGATGACTTTGCAGTTGCCATGTTCCAAAACCATTCTCTTTTCACGTTGGTCATAGTCCATGGAGTTTATTGTGAGTGAGTCATACGCACTGGCaacaactatactgaacaaaaatataaatgcaacatgtaaagtgatggtcccatgattcatgagctgaaacaaaagcTCCCAGAAATGGTCCATAggcacaaaaagtttatttctctcaaattttgtgcacaaatttgttgacATCCTTGTGAGCATTTGCCAAGTTAAtacatccacctgataggtgtggcatatcaagaatcagATAAAAAGCATGATTCTTActcaggtgaaccttgtgctggggacaaaaaaaAGCCACTAAAATTTTCTcacgtctcaagttgagggagagcgcaattggcaagctgactacaagaatgtccaccagaactgttgccagagaatttaatgtttatttcacAAGCCTCCAGAAACATTTTAAAGAAACTGTCAGAAATTGTCTCAGGAAAGCTCACCTACGTGTTCGGTGTAGTAACCGACTACAGTGGGCAAATGCTgaccttcgatggccactagcACACTGGGGAAGGGTGCTCTTCAccgatgaatcctggtttcaactgtaccgggcaaaaggcagtgtgtatgtgtgagcgaGCAGTTTGccgatgtcaacattgtgaacagagtgtaccatggtggcggtggggttatgttatgggcaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU832714 lncRNA downstream 6068 63285860 ~ 63286375 (-) True G733245
TU832739 lncRNA downstream 16785 63275445 ~ 63275658 (-) True G733270
TU832733 lncRNA downstream 25502 63266641 ~ 63266941 (-) True G733264
TU832732 lncRNA downstream 26862 63265291 ~ 63265581 (-) True G733263
TU832731 lncRNA downstream 27166 63265071 ~ 63265277 (-) True G733262
TU832772 lncRNA upstream 43278 63337981 ~ 63338202 (-) True G733303
TU832773 lncRNA upstream 44124 63338827 ~ 63339032 (-) True G733304
TU832978 lncRNA upstream 138435 63433138 ~ 63433605 (-) True G733486
TU832980 lncRNA upstream 140755 63435458 ~ 63435871 (-) True G733488
TU832981 lncRNA upstream 142932 63437635 ~ 63437914 (-) True G733489
XM_036985951.1 mRNA downstream 52613 63209032 ~ 63239830 (-) True LOC110530312
XM_036985949.1 mRNA downstream 324958 62882950 ~ 62967485 (-) True LOC110530309
XM_021613236.2 mRNA downstream 684677 62513304 ~ 62607766 (-) True LOC110530307
XM_021613234.2 mRNA downstream 979950 62299897 ~ 62312493 (-) True LOC110530306
XM_036985938.1 mRNA downstream 980684 62299897 ~ 62311759 (-) False LOC110530306
XM_021613250.2 mRNA upstream 181089 63475792 ~ 63494724 (-) False LOC110530317
XM_021613251.2 mRNA upstream 181089 63475792 ~ 63494725 (-) True LOC110530317
XM_021613254.2 mRNA upstream 252876 63547579 ~ 63561814 (-) True kiss1ra
XM_021614248.2 mRNA upstream 476980 63771683 ~ 63777609 (-) True LOC110530962
XM_036985956.1 mRNA upstream 508138 63802841 ~ 63837279 (-) False slc6a9
TU831229 other downstream 1107263 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 1244324 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 5428566 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 5445754 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 5481021 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 1695598 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 2223464 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 2806393 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 2898951 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 3264493 66559196 ~ 66560517 (-) True G737449

Expression Profile