RNA id: XM_021613254.2


Basic Information

Item Value
RNA id XM_021613254.2
length 1934
RNA type mRNA
GC content 0.48
exon number 5
gene id kiss1ra
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63547579 ~ 63561814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCTTCGACTTCTTTTCACACATCAAGATGTTCCCTCCAGACGTGTGGAATTCTACAGTCCTGATGTGGTTCAATGCGTCTGAGCTGAATGCTTCTCTGGAGAATCCGGAGGAGGGGGAGCACCCATTCCTGACGGACGCCTGGCTGGTGCCTCTCTTCTTCGCTCTCATCATGCTGGTGGGGCTCATCGGGAACTCTCTGGTAATCTATGTAATCTCCAAACACAGGCAGATGAGGACTGCCACCAACTTCTACATAGCTAACTTGGCTGCCACAGACATCATCTTCCTGGTGTGTTGTGTCCCGTTCACAGCCACTCTCTACCCACTCCCTGGGTGGGTATTTGGGGACTTCATGTGCAAATTTGTTGCCTTTCTACAACAGGTGACTGTTCAAGCCACCTGCATTACACTCACTGCTATGAGTGGGGACCGCTGCTATGTCACAGTCTACCCCCTGAAGTCCTTACGCCATCGCACTACACGAGTCGCCATGGTAGTTAGCATCTGCATATGGATCGGTTCCTTCATTCTATCCACCCCGATTTTCATGTACCAGAGAATTGAGGAGGGCTACTGGTATGGACCAAGACACTACTGCATGGAGAGGTTTCCCTCAAAGACCCAGGAGAGGGCTTTCATCCTGTACCAGTTCATAGCTGCCTACCTACTACCTGTCATCACCATCTCCTTCTGCTACACACTCATGCTGAAGAGGGTGGGCCAGCCGTCAGTGGAACCAGTAGACAATAATTACCAGGTCCACCTGTTGTCTGAGAGGACTGTCACTCTGAGGAGTAAGATCTCcaagatggtggtggtgattgtccTGCTATTCACCATCTGCTGGGGGCCTATCCAGCTCTTCGCCCTGTTCCAGTCCTTCTACCCCAACTACAGGGTCAACTACGCCACCTATAAGATCAAGACCTGGGCTAACTGCATGTCCTACGCTAACTCCTCCATCAACCCAATCGTTTACGGCTTCATGGGAGCCAGTTTCCGCAAGTCTTTCAAGAAGACTTTCCCCTTCCTGTTCAAACACAAAGTTAGAGACAGCAGTGTCATGTCACGCGTGGCTAATGCAGAAATCAAGTTAGTTGCTGCAGAGGAAGGCAACAACGATGGGAAATGAAATGAGCCATGGTCAGAGTGAGCTTCCGGGGGACAGAGCTGCTGGAGATTCAGTTCACtgtgcacacaaacaaacatacacatgACAGACTGCTGTGAATGCACACTGCTCAACATAGCCTGCTGTGAAATCACACTGTTCTGAAGGCAAACACCTGGTGGAACCAGCATTTTAAAATGGTACTTGATGTGTTTGTTTGCAATTCTACAAAATCTGACTGATCCTGCTCTGTTCTGGTATCACAGACTTGAAAGGACATTAAAGGTCCCGAAACAGTCATTCTGGTTCCCATATAAAATAACAACACCCATAATATTTTTTCCTGATAAAGCAAATTTCTCTCGTCAAACCAGGAAGTCTGAAAAGACATACTGAAtggagctagtaggctgagtgggcggggagctcaCCTTGACTGACTGTTCTTTGAAAAAGTCTAGCAACATGGATGCAGTGACATTATCTCAAGCATATTTGCTGATACACAAAACAACTCAAACATCATTGAAATTGCATGCAACTTCCAATCCTGTCATACATCACATCACGGTGTCATTCCTGCTCCCTCCCCCCAGTGCTCGACGTCGCCGGTCAACAAACCTCCGGTCGTGGCAACTCacattgcgcacacctggcaaccacaCACCTGCTCATCATTTGCTCCTTGATTACTCCCCCTTTACTTAGCTCTCACTTGTCATCAGTCATTAGGTGGTATTGTTCTCTCGCACGGTCAGTATGTGGCTTATGTTTGTTCTTGTTTATAATtgtattattaaactcacctccTGCTTCCTGA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function

KEGG:

id description
K08374 KISS1R; KISS1 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU833326 lncRNA downstream 1698 63544244 ~ 63545881 (-) True G733806
TU833032 lncRNA downstream 24786 63522510 ~ 63522793 (-) True G733540
TU833029 lncRNA downstream 27378 63519897 ~ 63520201 (-) True G733537
TU832971 lncRNA downstream 29225 63506107 ~ 63518354 (-) True G733480
TU832970 lncRNA downstream 41598 63505665 ~ 63505981 (-) True G733479
TU833364 lncRNA upstream 41450 63603264 ~ 63612708 (-) True G733841
TU833420 lncRNA upstream 132003 63693817 ~ 63696281 (-) True G733895
TU833450 lncRNA upstream 166970 63728784 ~ 63729801 (-) True G733919
TU833453 lncRNA upstream 195518 63757332 ~ 63760474 (-) True G733921
TU833477 lncRNA upstream 207050 63768864 ~ 63769070 (-) True G733941
XM_021613251.2 mRNA downstream 52854 63475792 ~ 63494725 (-) True LOC110530317
XM_021613250.2 mRNA downstream 52855 63475792 ~ 63494724 (-) False LOC110530317
XM_021613248.2 mRNA downstream 252876 63292443 ~ 63294703 (-) True LOC110530314
XM_036985951.1 mRNA downstream 307749 63209032 ~ 63239830 (-) True LOC110530312
XM_036985949.1 mRNA downstream 580094 62882950 ~ 62967485 (-) True LOC110530309
XM_021614248.2 mRNA upstream 209869 63771683 ~ 63777609 (-) True LOC110530962
XM_036985956.1 mRNA upstream 241027 63802841 ~ 63837279 (-) False slc6a9
XM_021613261.2 mRNA upstream 241027 63802841 ~ 63849266 (-) False slc6a9
XM_036985957.1 mRNA upstream 241027 63802841 ~ 63849879 (-) False slc6a9
XM_021613257.2 mRNA upstream 241027 63802841 ~ 63850062 (-) False slc6a9
TU831229 other downstream 1362399 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 1499460 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 5683702 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 5700890 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 5736157 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 1428487 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 1956353 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 2539282 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 2631840 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 2997382 66559196 ~ 66560517 (-) True G737449

Expression Profile