RNA id: XM_021613261.2


Basic Information

Item Value
RNA id XM_021613261.2
length 6282
RNA type mRNA
GC content 0.43
exon number 13
gene id slc6a9
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63802841 ~ 63885395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCCTAAAAAGTGGGGTTGGCTCATATGTTATTTCTCTCTTCCTTTGCCCCTCTTTAGTGGCCAAGGGACTTGTCAGTTAAACAATTCCACCAAAAGAtttgtttaaaataaaatatatagatatccGTTATGGCACTTTGTTCCTTGCCGATTTATATGGAGCGCCAAGTCTTGTCACGTCCTTTGGTTGGCCGCTGTCAAGACTGAGCAAGCCTCCTATAGTTCAGTAGCAAATACAAAGAAACGGGCCGTTGAGACCATTGCATATACTTTTAAAGAAACATTTCTATGAAGAGAAAAAATGTCATTGCTTGCGAATGGAGCTGTTCCAGGAGAACCTGTGAAGACGGATAAGAACTCCAGGAGAGGGAACTGGGGAAACCAGATAGAGTTTATCCTCACCAGCGTGGGCTATGCCGTGGGCCTGGGAAACGTATGGAGGTTCCCCTACCTCTGCTACAGAAATGGAGGAGGAGCCTTCATGTTCCCCTACTTCATCATGCTGGTGTTCTGTGGGATCCCCCTGTTCTTCCTGGAGCTCTCATTTGGACAGTTCGCCAGCCAGGGATGTCTGGGGGTTTGGAGGATCAGCCCCATGTTCAAAGGTGTGGGCTACGGGATGATGGTGGTGTCCACctacatcggtatctactacaaCGTGGTGATCTGCATTGCCTTCTACTATTTCTTCTCTTCCATGACCAACCTGCTGCCCTGGACCTACTGCAACAACCCCTGGAACACGCCCACCTGCAATGGTGTGGTGACTCCCAGGGGCATCAACAACACCTTGGCCAACGTCACCCGCAGCTTGGTCACCGGGGCCGCTGAGGTTGCCGTGGAGGTGGTCAATAAGACCAAGAGGACCAGCCCCAGCGAGGAGTACTGGAAACACTACGTTCTGCAGATCTCAGACGACATCGGGAATTTCGGTGAAGTCCGTCTCCCTATTCTGGGATGTCTGGCCGTGTCATGGGTGGTGGTCTTCCTCTGTCTCATTAGAGGAGTCAAGTCTTCAGGCAAGGTGGTGTACTTCACAGCCACATTCCCCTACGTGGTGCTGACCATCCTCTTCATCAGAGGCATCACCCTGGAGGGAGCTGTCACCGGCATCAAGTACTACCTTACCCCACAGTGGCATAAGATCCTCGACGCTAAGGTGTGGGGAGACGCTGCCTCTCAGATCTTCTACTCTCTGGGCTGTGCATGGGGTGGGCTCATCACTATGGCCTCCTACAACAAGTTCCACAACAACTGCTACAGAGACAGCATCATCATCAGCATCACCAACTGTGCGACCAGCGTGTATGCAGGCTTTGTCATCTTCTCCATCCTGGGCTTCATGGCCCACCACCTGAACGTAGATGTATCTGAGGTGGCCGACCACGGTCCCGGCCTGGCCTTCGTGGCCTACCCAGAGGCCCTCACTCTGCTGCCCATCTCCCCTCTCTGgtcccttctcttcttcttcatgCTCATCCTGCTGGGCCTGGGGACGCAGttCTGCCTGCTGGAGACCCTGGTGACAGCCATTGTGGATGAGATTGGTACTGACTGGATCGTTAGGAACAAGACGGTAGTCACAGGAGGAGTGGCTATAGTGGGCTTCCTGCTGGGGGTGCCGCTCACTACACAGGCTGGGATCTACTGGCTGCTGCTGATGGATAACTATGCTGCTAGTTTCTCTCTGGTTATCATCTCCTGCATCATGTGCATCTGTATCATGTACGTCTATGGACACAAGAAATACTTCAAGGATGTTGAGATGATGCTGGGTTTCCCCCCTCCAATCTTCTTCCGGGTCTGCTGGAGATTCGTGTCCCCCATCATCATATCTTTTATCCTGATCTTCACAGTGATCCAGTACAAGCCGATCACCTACAACGACTATGTGTACCCCGGCTGGTCTCTAGCCATCGGCTTCCTTATGGCCATGTCCTCCGTCATCTGCATACCCATCTATGCTCTCTACAAGATCGCCAAGTCTGAGGGAACCACATTTTTAGAGCGGTTGAAGAATTCGTGCAAGCCAGACGTGAAGTGGGGCCCGGCCCTGAGTGAGCATCGGATAGGCCTCTACGCCACCCCAGGctcagagggagaggtggaggtgcgTCCCCTGAAAGAGgagctgaaggagaaggagaaggaggatgagAAGAGGGATGAGATCAGCCTCACCATCCAGGGCAGCAACGGCTCAACAGCACACAACACTACCCCCAGCGCATAGAGGCCCCCACTGGGCTAGTGCCAGTCCCCACCCAACCCTTTCCCACAGCACACCGCAACGTGGGGGAGAGCCCACTCACTGGAGACCTTTACATATTGTAAGGGCTTATTATTTCTAACCTCTAGAGAAATTGTCCGTCATCCAAAAGAATTTCACCTCTTGTTTCGACATAATTGAATtatgcatttttttttctcttcttcaTATTATGCAGGTGTGTGTACACACTGTGAATACATGGCACAATAGGGGAAGGACAACATTTTTCTCCTTCATCTGTAAAGATATCCAGCGGAATTGGCAACTTTTCAAGTGGCAGTGCTGGGGGTTTTAAAGCTGGAGGCCAGGTGTTCTTTGGGTCAGTGCTGTAGACATCTGAATGGAACCACTCTAGGGACTGATCTTTCCCTTCTGCTGTTTTATCTACGGTATAGCTTTTGACTCTCAGTACCCTCTGATACAATATAGTCTCCACTACTCAGACTGTTACGTATGCTGCTTTAGGGTTACCCAGAACAACTCAAATTGGAGTAAGCCAATGGCTTTTTAGCTACTCATCTGACACAATATTTCATTTGACTAACTATACAGTTAAGCCCTTATACTTCCAATGATGTAAACAACTAACATGCATTACAGCACCaactccccacacacacagagcatgttGGTCTCCAGCTTTCTGAACAGCTACCCTGACTGAAGCACATGACTTCCCAATGCCCATTCTCAGGGTCCCAAAACAATTTACTACTTACTGAACACGTTCAATACCTGAGTAAATGTTTCTATGATTATGGTAGGTTTTACATTAGAGAGGGAGCTAAGGTAAAGACAACCATAACATgttcacacacaaaaacaaatggGTGGATGGGATGCAACTCAGTACAATAAAGTGCCATCTCTCTTTTAGTCTTCCAATCATTTCCGCGGGAAATGCATCTCGAAATGTGGCATCTCACTTGTGAAGGGAGCATTTGATTGAGGACCGAAGCAGCTAGCATATCGAGGAGGGAGTACACAGTGGTGTTGCCTCATAGCCTCTGTTACTCACAAGTAGGATTTGCCCCAACCAAGCATGTTACCAAAAAACATGTTGAACATGCATGAACTTTAATATCTCGGTGACATAGCTGGCGTATGTGTCTTTGTTCACTTTTTCAAAACTGAGAGACTTGCATCAGCAGGTGTCTTTGCAGaggaaaataaatgtatttacaaGCGTTTTAAAGCTCTGAGCCAAGTAATGGTGTGATTGGATGTGgaaacaggaaggagagaggcCATTGGTTAGCCTGGGGATGGAGCTTGTCTCCAGGAGAATAAAAAAAAACTTCAGTCATCTTTACTGAATTATGTAGTTTATATGTAGTTGTATAGTATCGTTCTCTCTATAGAATTGTCTTATTTTTATCTTTTATTATTGTAAATTAACATAGTATATAATTATAAGGAAAACATGTTGATGTTGTAAGAAGCAACAGTATCTTAAGAAATAACAGTAATGTTTACCATTCCTCATCCATGACTTGATTTTTTACtggtaattgttttattttaggGGGTTGGAGTGGGAGGGACATGTATTTCAGTCACTTTGTGAAAGGAtgctgttgtggttgtgtttAGGGTGGGAGTAGTGCTCTCACAGGTTGCTGGAATTGGCAATTGTCAAGAggtcccatctctccatctaatTTGAGGCATTTGTCTCCGCTCTGTTACGTTGCATCTGTGTTGCAGTGAGGCAACGACCAGTCTGTGGTAACATTGTAAATCCACTGGGTCCTTGCCTGGCCTACACTGATGGAGAGAGGTAGTCTGGCAATGCAGCTGCTAAAGAGCTAGAGCATCGTATCTTGGTGAAACTACAGATGTATTTCTTCTTTAACCAGTACGTACGTCACTGTATATAATGTTCAACATCTTTATCTGACTGCACAAATCTAGTTTCTGCTGTCATATGACTATGAGTTGTTCTCCTTCCATTTTACTTCAGTTTCACTGTGTTAAAAGTGTCATGACAGTTAGCTATCCAGACTTTGTCCAAAATAGAAACGAAACCTTGCAGTCCAACAGGAGGCATGTCTGACACTCAGGGGAGTAGGTAGTGGTTATTTTGTCCCACATGGCATCTTATTGCCTATGTAATggggaatagggtttcatttgggaccTACCCAAAGTTGTTGGTTatttaaacaaaaaaacaagCACACCAGTAGGTTAGATGCAGCCCAACAGACTCAAGTTTTACTTCAGATGGAGACAAGACTAGTGTGTTCTCCTCCTATGATGATGACAGAAGCACAGTACAGCCACACTACTGAATCTGTTATAAAGCAGAGTAGTAGTGTTCCTGGAATGACGATAGCACAGGATATTAATAATGATGTTGCTTTTAACTGATGTGTGTGTCTTGAAAAGTTAGAAACACTATGGATACATATCATTTTGGTAATAAGAAGTTGACAGCAGGTGTAAATGAGCTAAAGTGGGTTAGTATATATTGACCCTGGTGACTTCATTTGATAACAGAATTATTCTCGACATGCCGGCTGAGGCTAGGAAGTCCTCTAGGACTTTCATTTCTTCTTCTTGTTGAACTGTTGACTTGTAGTCCTCTTCTTTATAATAGTAGTAAGTTAGGATAACCACCATGCTATTGCAACCCTTTGGTCTCTGCTATCCCCGGAATTCTTCCTCTATCAGAGGactggtgtttgtgtgtttttatttgagtgtatttttattttcttatAGAATAATTAGCCAATAATCAGTGTTTAGTGTAATATGTATTTATGTGTAGTGGATACCCTACTGATAACTACTATGTTTAGACCACGATAGTGTCATTATTGATGTCATGTAATTCTAATCAATCAGTAACGATCCATTTTTTCATCTAACAAAACACAAACTACCTATTTAAGAGACCTTTTGTTTttgtacaaaaaaaaacaaacatgtattttatCGTCACGATTTATCATCCGTGTTCAGTGACACTACCTTTATCTTGTTCTAAAAGCCAGCTGATATCAAAAGTATTGCCGAACAAAAGCTTGGGTTGAAACTTGAAATTCAAAGGAATGCATTTACCAGTATGTTCTGTTGGAGGTACATGACATGTCTGCAGCTACATGACTGTTGGAGACAGTACATAATAAGTGTTCATCTATTTTACATAGTAACAATGCCAACAGTATTAAGTGAACACTGTGGTACTGTACTGCAGTCACATCTGTTTACAATATAGCGACTCTGCTGTACATTTTTTGTGTAAACAGACTGGCCTTTTCAATTTGGTGGAGGAGTAGTTTACGAGCATTATGTGGCAAATAAAGAAAAGAAAATCAAACAGCATAATCAGCAACATTGCCcgggccccaggaagagtagctgctgcttcagcTAATAGGGATCTGAATAAAAGACTAGATAACATTGTAAATGCAATACATGACATAAGATCAAAATATCAATGTATTGGGGAACTATGTATGAAAGGGTGATTTTGTTTTCATCTTATTCTTCCTTTTTGGGATTATTATTTCATTAGCTTGGCATTTTATCATTTGGTGAGACCCTTCCATTAAAATGATTAACCTAAGCAGGTAGTGTAAAAGGACACATTGAATGAATATTCATATATTTGTGACATTGTAATAGAAACAAATTGTTCATCAACTCATATTGAAATCACAGTAGTAAAAGTCTTCTATATATGGAATGTAAGAAATGAATACATGTTAGCAATTCTGAAAACGCATAGTAGGCTTTTACTGTACTAAAATTATCTGCTCTGTGATTCACTAATCATAGAGATGTCTGAATTTCTTACTCATAAACATGTTTTTACAAGTTGTTTCAGCACTTTAAATCAAGTCATGTGTTTATAACATATCTAATAATACAAACTTCCGTTTTGAAATAAGGCTTTACAATGGTCTGAGTAAACTGTTGTCACTGTCAGCAGAGTAGACATGATTTATGCCAATGTAAATTCTATCATAAGGGAGAATAAAGCACAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU833504 lncRNA downstream 1697 63800895 ~ 63801144 (-) True G733968
TU833503 lncRNA downstream 2051 63800469 ~ 63800790 (-) True G733967
TU833496 lncRNA downstream 10502 63792023 ~ 63792339 (-) True G733960
TU833495 lncRNA downstream 10905 63791672 ~ 63791936 (-) True G733959
TU833491 lncRNA downstream 15046 63787563 ~ 63787795 (-) True G733955
TU833589 lncRNA upstream 83343 63932609 ~ 63933246 (-) True G734050
TU833798 lncRNA upstream 135251 63984517 ~ 64021810 (-) True G734246
TU833812 lncRNA upstream 177888 64027154 ~ 64027444 (-) True G734260
TU833819 lncRNA upstream 193973 64043239 ~ 64043553 (-) True G734266
TU833820 lncRNA upstream 195533 64044799 ~ 64045034 (-) True G734267
XM_021614248.2 mRNA downstream 25232 63771683 ~ 63777609 (-) True LOC110530962
XM_021613254.2 mRNA downstream 241027 63547579 ~ 63561814 (-) True kiss1ra
XM_021613251.2 mRNA downstream 308116 63475792 ~ 63494725 (-) True LOC110530317
XM_021613250.2 mRNA downstream 308117 63475792 ~ 63494724 (-) False LOC110530317
XM_021613248.2 mRNA downstream 508138 63292443 ~ 63294703 (-) True LOC110530314
XM_036985959.1 mRNA upstream 40411 63889677 ~ 63892473 (-) True klf17
XM_021613274.2 mRNA upstream 136063 63985329 ~ 64019271 (-) False LOC110530324
XM_036985960.1 mRNA upstream 136063 63985329 ~ 64157280 (-) False LOC110530324
XM_036985961.1 mRNA upstream 136063 63985329 ~ 64157280 (-) False LOC110530324
XM_036985962.1 mRNA upstream 136063 63985329 ~ 64157280 (-) False LOC110530324
TU831229 other downstream 1617661 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 1754722 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 5938964 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 5956152 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 5991419 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 1141035 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 1668901 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 2251830 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 2344388 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 2709930 66559196 ~ 66560517 (-) True G737449

Expression Profile