RNA id: XM_036985963.1


Basic Information

Item Value
RNA id XM_036985963.1
length 4152
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110530324
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63985329 ~ 64157280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGCGCTGAGCGGCAGCACTGCACCTAAAACACTGTTTGCGAGCGGCTCATCTACCTTTTAGATCCAATCTCTGCCTTTTCTTCGTTATTCTTCGACTCCACGAAGATTCCCTTTCTCTCAGAGGTACATGCAACTCACACCACTCTGATCACAAGAGCTGGGGACAGCCTGGCTCTCCACACCGCAACATTGCAGCGAGGTGTTACTACTTTTCTTCCCATGCGACTCCGTTATCTCCGGTGCTTTCGCCAGCCTGCCATTGAAAAGTTTCGGTTGTGAGGATAAACGAATATCTAGGACCTTCAAAAGGATTGTTTATAACAACAAGGTGACCTGAGGAGGATGACCCCACAGTGAGACTGGACCCTTCCGTGAGGACCCACCTTCCCCTGACCTGCGTGTCCAGAGCCTCCTCCCGCACCCCGGACACCCCGCCCCACTCCTTCTTCTCTCAGCCCCTCCTCTGGGCCCAGGAACCCCCCTCCCCAGGTACCAGGATGGACCTGCACCGGGCCGCATTCAAGATGGAGTCGTCCTCCTACCTGCCTAACCCTCTGGCATCCCCGGCCCTCATGGTGCTGGCTTCCACCGCCGAGGCCAGCCGCGACGCCTCCATCCCCTGTCAGCAGCCCCGCCCCTTCGGCGTGCCCGTCTCCATGGGGGAGAAGGACATGCACCTGCCCTTCAACAACGGCTCCTACACCTTCGCCTCCATGTACCACCGTCAGGGAGCCGTTCCCGGGGGCTTCCCCAACCGGgacttcccctcctccctgctgcacCTGCATCACCAGTTTGCCCCTCCAAATCTGGACTGCTCCCCCATCAGCATGCTGAACCACAGCGGGGTGGGGGCCTTCCGACCCTTCGCCTCCCCACCAGAGGACCGCGATGGGGCAGGGGGCTATCAGTCAGCCTTCACCCCAGCTAAGCGCCTCAAAGGCTGCCTGGATGCAGACGCCTCTCCCCACCTGCGCTACACGGACGCTGAGGGTAAAGAATATGACTTTGGGGCACAGATCCCCTCCAGGTCCCCAAGCGCCCTCAAAGCAGTTGAGGACGCTGGGAAAAAGATTTTTGCAGTGTCAGGCTTATTGTCCGACCGTGAGACGTCATCAAGCCCAGAAGACCGCATCGAACGTTGTAAGAGGAAGGTGTCTCTGTATGACAGCCAGGCCCCCATCTGTCCTATCTGCCAGGTGTTGCTGCGTCCAGgagaactgcaggaccacatgGAGCAGGAGATGGAGCGCCTCACCCACATGCACCTCAGTAAGAACCCATCACACGGACACAAGGACAGCAGTGTGGCTCCAGGAACTCCTAAGTCCATGCTGTTGTCGGTGCACATCAAACGCGAGGGAGAGTCACCGGTggtctcccctctttcctctgaAGACGCCCACCACTCCGACAGATACCAGACATTTTTACGAGTGCGAGCTAATAGGCAAACGCGATTGAATGCCCGGATTGGGAAGATGAAGCGCCGGAAGCCAGAGGATGGGCAGAGGGAGGGTGCGTTTGCTGAGGATGACTCTGCAGACATGGACGGAGAGAACGGGACCCGCTTCGAGGAGTACGAGTGGTGCGGCCAGAAGAGGGTCAGAGCTACCACCCTGCTGGAAGGAGGCTTCAGAGgaACAGGCTTTGCCATGTGCAGCACAAAGGAAAACCACGACAGCGACGCCGACCTGGACGTGGATGGAGACGACACGCTGGAGTACGGCAAGGCCCAGTACACAGAGGCAGACATCATTCCCTGCTCCGGAGAGGACCAAGGAGAAGCCAAAGAACGGGAGGCCCTGCGCGGGGCGGTGTTGAATGGCGGAATGCCTTCCAACAGAATAACACCAGAGTTCTCCAAATGGGCCAGTGATGagatgcCCTCTACGAGCAACGGGGAGAGCAGCAAGCAGCAGCTGCCTCAGGACCCCAACGCCGCCTGCTCATCCTCCAACGTGCCCCGGACCTGTAAAAACAGCGAAATAGAGAAGATCACAGAGGGCTCGACAGCCACCACGTTCGAAGCACTAAAGGCTCGTATCCGGGAGCTGGAGAAACAGATCCTCCGAGGGGACAGATATAAGTGTCTCATCTGCATGAGGAAGAGATTCCAAACAGACAGGGCTGAAGACAAGAATCTGGGCCAATGGGGGCGGGCCCTCGCGGTAACAGCGCCAAATGAGAGGCGGGTTGCTGAGAGCTCAAAGCCCCTCCCGCCGCTGAGCATTTACTGTTTGTATAGAGGCTACGTTATGGGCTGCAGCGGCGGCGGGATTAAACGGCTGCTCCCGCTCCGGAGGGACTCGTACACGATGCCCCTCACCTCCATCCAGTGCTGGCACGTCCACTGTGAGGAATGCTGGCTCAGGACTCTGGGAAACAAGAAACTGTGCCCACAATGCAACACCATCACATCGCCAGGAGATCTAAGGCGCGTCTACATGTGAAGAAGATGGCGCCTGCCCTGACCGGCCTacacctccatcccctcctccctccatttgtTCCTCATATTTCCATTTGCTCTCTCAGTATTTGTTTTTGTTGACCTTACGTGAGCCTGGGTTTGTGAAGCCCCTTCAGAGCTTAGAGAGATTACTGATGTATTGAATGACTCTTCAGACCAGGGGAGGACTGACtgatcaaccaaccaaccaaacatTGGAACAGAACCTAACCAAGTAGTTCATTATGACCGAGTGTTCTCAGAATGACTAACCAACCACCCCTCACTGGCTCCCTCCACCCTGCCCTCTAGTGGTGGACGATCTATCCAGtcagatgccctctggtggtgggTGGTCTAGTCCAGTCAGATACCCTCCACCCTGCCCTCTAGTGGTGAGTGGTCTAGTCCAGTCAGATACCCTCCACCCTGGCTGACACTTCTGGTTCTGTGTTTTTTGATCCTGTAGCTCCGATGACCCATCTTCACACTGCTGTGTTACTCACTGAGCACCATCATCCCTGCGGAGAGGTGTGTTCAGGTGGCAGGAGGTGGTGGTGTAACTCCCTCTGTGTGGAAAACCCCCCTCAGCCAAGCTAGATATTAAGCTGACCACCGGTAGTCGCACCCTGCTTGAAGACTTGGTAAGGGGGAAAGGAAACCAATCAACTCTTTCAGCGTTCAACCAAACAGACAACCTCGGAACATCCAGGGGATCCTCTTGTTCTTTTCAACCTCCGTTTCCCTTCAGTTGTGGTGTTATAGTGAAGTCAACCAAATCCCAAGAATCAGTGCAAGCACATGTATAATAGTCTGTGTATGTTTACAGTGTTGTGTGTAAATGACATAGAGGTTACACTTGTATACATatgtacgcacacatacacacgcacacatacacacacaaagtatATATTATTAAAGTCCAGTTTTTATTTtgagtttggggggggggtttaaaaaATGGACAAAAAGAAAGCCCTCTGTATTTTTAAACCAATTTTGTCATCTTGAGGTTGAGGTTGAAGTTCTATTTCATTGTACAGGAATACAtttaaagtaataataataaactaCTCAATTAGAAATTCAAGGTTTAGATGGTGTACATTTTTCATTAAACTATACAGTAACATCTGTAGAAGATGTAAACCTAAAGCAAGAAGatgatgtttatttttatttagtttaatgGAATGTAAAGATTCAAATGGCTCTAACCCTAGACTAGGAGAGATGATGGCTTTGAATTGTACAGAGCTGCAACGCTGGCCAAACAGCTATTTTCAAAATCGCAACCTGGAACGCAGTTGAGTTAACCTCCACCTCCCACCTCAGTTTTTGATCATATAACTTTACTAATCACTTTGGTTTTCTGTTTTGTCCTCCGCTCTGATAAAGCCCCATAAAATGCTTCTCCTCCAGAAATGTTTGAGTGTTCCTTCCATTGTGCTACCCAGCAAAGGCTCCACCATGGCAACTCGTAACGGTAGGTCCTTCCCATCTGTAAGGGAAAAGAGGAGTGGGCCGCCATGTTGGGTTGGCCAACTGATTGCCAAAGCCCAGTGACTGAACACTACCCCACAGCAAGGTGGTGTGCTTTGTATTTGTAAAACTATGTATCCTGTGATGTCTGTATTGATGTATGCTgacaaaaaataaagaaatgaaaGGTTTATGACTGAATTCAAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU833589 lncRNA downstream 52083 63932609 ~ 63933246 (-) True G734050
TU833504 lncRNA downstream 184185 63800895 ~ 63801144 (-) True G733968
TU833503 lncRNA downstream 184539 63800469 ~ 63800790 (-) True G733967
TU833496 lncRNA downstream 192990 63792023 ~ 63792339 (-) True G733960
TU833495 lncRNA downstream 193393 63791672 ~ 63791936 (-) True G733959
TU833923 lncRNA upstream 49563 64206843 ~ 64207055 (-) True G734368
TU833945 lncRNA upstream 67386 64224666 ~ 64224973 (-) True G734390
TU833956 lncRNA upstream 77380 64234660 ~ 64235006 (-) True G734401
TU833960 lncRNA upstream 83450 64240730 ~ 64240938 (-) True G734405
TU834012 lncRNA upstream 125596 64282876 ~ 64283157 (-) True G734453
XM_036985959.1 mRNA downstream 92856 63889677 ~ 63892473 (-) True klf17
XM_021613262.2 mRNA downstream 99934 63802841 ~ 63885395 (-) True slc6a9
XM_021613260.2 mRNA downstream 99935 63802841 ~ 63885394 (-) False slc6a9
XM_021613258.2 mRNA downstream 99936 63802841 ~ 63885393 (-) False slc6a9
XM_021613259.2 mRNA downstream 116465 63802841 ~ 63868864 (-) False slc6a9
XM_021613283.2 mRNA upstream 142951 64300231 ~ 64301927 (-) True tmem53
XM_021613279.2 mRNA upstream 179405 64336685 ~ 64341073 (-) True LOC110530326
XM_021613292.2 mRNA upstream 348637 64505917 ~ 64511226 (-) True LOC110530331
XM_021613293.2 mRNA upstream 354276 64511556 ~ 64523457 (-) False LOC110530332
XM_021613294.2 mRNA upstream 354276 64511556 ~ 64528668 (-) True LOC110530332
TU831229 other downstream 1800149 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 1937210 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 6121452 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 6138640 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 6173907 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 833021 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 1360887 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 1943816 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 2036374 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 2401916 66559196 ~ 66560517 (-) True G737449

Expression Profile