RNA id: XM_036985968.1


Basic Information

Item Value
RNA id XM_036985968.1
length 4330
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110530336
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64630945 ~ 64640936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGCGACGTTTCCTCAGTCCAAGCCATATTGGCTCCGGGGATCTCTGTTTGAGATTTAGGATTTGACACACAATGGCGATGTATGGGGGTTAGTTTCTTTGCGCAAAGCAGTATACGGCATTTTCTCACGCAGTTGTTTACATTCGTAGCTAGTACTGCAGCTAGATTTTACTACGACCCTGTTACTACTTGTTTTAGAATGACATTtgataaataacaatatatataaatacatgtttGTAGCGCACAAGTCTGTATTGAGGTGCGTAACATGGTGTTTTGAAAGCCCCCGCTTTTGAATGAAATGCCATCTCATCGTGATTCAATTCCTGTCACTGCAGACAGTTGAGCGAAAACACTGGGATGGCTAGTACCCTTTCAGACCAGCTAGAGGAGGTACGATGCCATGCGGAAGCTTGTCTGTATTCCACTGGCTCAGTGCTGGAGGTCCGTGCAGGAATATCAGCTATGGCCAACATACCCTTACCACCATCGGCCAAATACCGCTACATTGCTGCGGAGACCATGATAATTGAAAACGGCGTCAATAACAACAGGAAAGAAACAATAGGTTCCCTGCAGAGATTGTCCACAGCACTGAACATTCTGGAGAAGTATGGCTGTAACCTCACCAGCTCCAGTAGGCCCAAGTACTGGCGCGCTGTCAAGCACAACAACCCAGTCTTCAGAGCaacagtagatgtcattcagGGAGGAAGGGCAGTGCTTTGTCTCTATGGTTACTCCAATCAGCAGCCAGACGGCCTGAGTTTCCCTGATGAGGTCGTGGAACCTGACATTGAGAAGGTCGCAGCGGTCACCTTGGAGGTCATGAGTCTACGCATGGAACTGGACATGCTCATCAAGGAAGCTCACCCCCACCCAGAGTTCTTTGAGAGAATTATCCCATCACTGAACCAAAAGGATGACTTCGAACCCATTTCTGATGCGGTAGCTATTCCCTCCAGCCTCAGAGAGAGCCAGCCCCTGTACATGTCTCTGGcctccctgtctcagtctcccaCTAGTGCCTTTCTTCCAGTACGGACTGCTAACGCCTCaacctccacctctatctctaccAGACACACAgAACGAGCCAATCACCACAGGACTGTTGTGACATCCTCTAAAATGCGAAAGAACCACAGCTCCCTCCTGTCATGGCACTGTACCCACTGCACCAGGGTCAACTCCAACCAGGACATACTGTGTGAGACATGTGAGAGACCACGCCTGGCCTCCTCTGGCTCTGCTAAGGATGAGTTCCCACAGCCCTTCACCATCACTgAGTGGCAGTGTAAAAGCTGTACGGTGGTGAACGCGGGCAGTAGTATCCTGTGTGAGGTGTGTGAGCGCCCCCGCCTGGCCACCAAGCCTCCGGCAACCCCCACACGCCCCACTCCTACACCCAACCGGCCTGCTGCTCCGGTACTGGGAATGCCAGGAGACCCAGACAGCCAGTGGATGTGTCAGTTCTGTACTTACATCAATTACACTCCAGCGTCAGTGTGTGAGATGTGTGACCTCCCCCGCCCCGAGCCCACCAAAATGCGAGTCAAACTCCACCCTCCGTCCCAGGTCAAAAAGGTCCCCGTGCTGTCCGTCAAACCCAAAGACCCGCCCATGGAGGACCCTGATTTGAGGAGACAGAAACTGATGAGGGAGGAGGGGCTAAAGCTGATCCAGCTCATTAGAgatggagagaagaaaggagTGAGTCCAGAGGAGGTGTACACAGGCATGCGCGTCTCCGGGGACGGAAACATCCTTCCCTGTGATTGGCTCAAAGCGGAGCTACCTCACTTGCTCGACCAGATCTGTGCCACGGCCACTTCGTCTCGAGCGGCAGACCTGAAGGCCGGACAGAACCAGAATGGTACTGGTACTGCAGAGGATACAGGTGTGGAGGAGGAGCAGACGAGAGGGGGAGGAGTGACACTGTCCAGGGCTGAGGCCAAGCTGGCCTGGCTGTCTGCAGGGGGAGACACTGAGAGAGCAGCGAAACAGGCTCTCAGAGACAGACACTCTAAGGTAAAGGAGCTGTGTTCTCTGGGGTTCACTGACGAGGTGCGGTGTCAGGAGGTTCTGAGGCAGAGCGAgggagaggtgcggggggctctGTCTCTGCTGCAGCGACCTCTCATGGAGCCCTTCCACCAACGCATGTGGAGCGACCAACCTGAGCCACCCATCGACATCAACCACCCCGACAAACAGCGTGTGTGCCGGAGGCTGCTGGCGGTGTATGACCTGCCCAGCTGGGGCCGCTGTGAGCTGGCCCTGTCCCTGCTGCAGGAGCGTACCGCCCCCTACTCCCTAGACGACGTGGTACAGGCCGTACGCGAGTCACATGACCGAGACTTCATCCGCCGGGTGCTGGCCAAAGAGTGCCCCATCTGCCTGTCAGAATTTCCCCACAGCAAGATGCAGTCTCTGACCTCCTGTCAGTGCTCGGTGTGCTGTGGCTGTTTCCAGCAGCACTTCACTATCGCAGTGAGAGACAAGCACATCAGAGACATGGTGTGTCCCGTCTGCTGGGAACCTGACATCAACGACCCCGAACACCTCAACAGCTACTTCTCCACCCTGGACATCCAGctgcgGGAGTGTCTGGAGCCGGAAGTGTATGATCTGTTTCATAAGAAGCTGACTGAACAAGCCCTCATCAAGGACCCCAAGTTCCTCTGGTGTAGTCATTGCTCCTATGGGTTCATCTATGATGGAGACCAACTGAAGGTCACCTGTTTCCAGTGCAGGAACAGCTTCTGCGCACAATGCAAGAAACCTTGGGAGTCTCAGCACGGTGGTCTGTCGTGTGAACGGTACCAGTcctggaagagagagaatgaccCAGAGTACCAGAGGCAAGGCCTGGCCGGATACCTGCGTGACAACGGCATcaCATGTCCAAACTGCAGGTTCCAGTATGCCCTGTCCAAAGGAGGCTGTATGCACTTCAGCTGCTCCCAGTGCAGGTACCAGTTCTGCAGCGGATGCAACAATCCCTTCCACACTACTTGTGCAGTGATCCATTGTAGTGTGACAGGCCTGCATGCCCATCACCCTCGAGACTGTCTCTTCTACCTGAGGGACTGGGAGCCTGGCAGACTACAAGCCCTGCTGCAGAACAAGGGTGTTGAGTTCAATACGGACACCCCTCCAGGAACTCAAGCAGgactgtGCGGAGTGATAGAGCAGAAGGATGAGAGTGGGCAGCAGACGGACTCGGCCTGTGGGGCTCAAACTCAGCCTGGCCATGCAGGACTGTGCGAGAAACACTACAGAGAGTACTTGGTGAGCCTCATCAATAGCCATTCCATCGACCCGGCCCCTCTCTTCAACGCCAACGAGCTGGTGCTGGCCTGTCGGAGATACCAAGTGGATGACGCCCGGGGGGAGCTGGAGGACGATGTGACGTACTATACTCGAATACTGGAGAAACTTATTGATGAAGTACCACTTGGAGACAAGGTTCCACGGAAGAAATGAAAACTACTTGTTTGTTCGTTGAAGTGTTTTTAGTATTGAGTGTTGGGATTTTGGCTCTATAAGCCATCAAATGTGTTTGCGTCAATGTGACTGTTACACCACACAGCAGAAAGCTCTGCTTACATCCCCATTATTGTGCTACAGTTATTTATGAATCTATGTTAGGGCTAAATGCTCAGTTGCACATTCATTTAAAACAGAGAagaatgagtgggtgtgtggcCGTGTGGGTGTGTGCATAACATTTCAAGACTGTGATAACAGGGTTACAGCTTAAATAACCAGTTATATTTAGAGGCATCGCTTCATTGCACAGAGTCGGGAGTTGCATGCTCTTAACTGTATATTTCTGTCTGggggggaaatatatatatatatttaaacaccCAATAAACCACTAGGTTTTCACACCAACtgtaatctagcacacctgattttaataattagctggtttatATGCTGAATCGGGTTAGTTAAAACTGAGGTTGAACCGAAAACCTGCAGGAGGGTAGAACTCTAGGAacggggttggagagccctgcaatAAACCAAAAGATCAATCATCCACTATGGTTCTGTCATGCTTTCTATCCAAAATGTTCCTGGTATGCTTGCTGGAAGGGAGGTAGTTGTGTCCTCAGAGTAACTGCAGGGTTGACATAGTTACTGGAATGTTTAGGGGGGATTGGATCAGTACCACCCCAGAGGTACTGCTTCAACACTGGACATTTCGAAACTGAAGATGGTTTCCCCTCCAGGTATCATTGTGAAGTATTTCTACAGTAAAGGAATCATACACAATCATTAACAATAAACTTCAGATTTTACTTGAGATA

Function

GO: NA

KEGG:

id description
K11974 RNF31, HOIP; E3 ubiquitin-protein ligase RNF31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834556 lncRNA downstream 5645 64624877 ~ 64625300 (-) True G734936
TU834553 lncRNA downstream 9099 64621551 ~ 64621846 (-) True G734933
TU834552 lncRNA downstream 12035 64618686 ~ 64618910 (-) True G734932
TU834550 lncRNA downstream 15385 64615360 ~ 64615560 (-) True G734930
TU834534 lncRNA downstream 25002 64605546 ~ 64605943 (-) True G734920
TU834689 lncRNA upstream 181368 64822304 ~ 64822678 (-) True G735049
TU834721 lncRNA upstream 201554 64842490 ~ 64842697 (-) True G735081
TU834807 lncRNA upstream 249868 64890804 ~ 64891051 (-) True G735166
TU834833 lncRNA upstream 267182 64908118 ~ 64908398 (-) True G735192
TU835553 lncRNA upstream 294100 64935036 ~ 64935267 (-) True G735830
XM_021613300.2 mRNA downstream 10897 64557297 ~ 64620048 (-) True LOC110530335
XR_002474507.2 mRNA downstream 86360 64539032 ~ 64544585 (-) False LOC110530333
XR_002474508.2 mRNA downstream 86360 64539032 ~ 64544585 (-) True LOC110530333
XR_005052930.1 mRNA downstream 91977 64532271 ~ 64538968 (-) True LOC118965543
XM_021613294.2 mRNA downstream 102277 64511556 ~ 64528668 (-) True LOC110530332
XM_021613313.2 mRNA upstream 16909 64657845 ~ 64665662 (-) False LOC110530340
XM_021613314.2 mRNA upstream 16909 64657845 ~ 64665674 (-) False LOC110530340
XM_036985970.1 mRNA upstream 16909 64657845 ~ 64665706 (-) True LOC110530340
XM_021613315.2 mRNA upstream 28534 64669470 ~ 64685654 (-) True LOC110530341
XM_036985975.1 mRNA upstream 70531 64711467 ~ 64719874 (-) False c8h5orf22
TU831229 other downstream 2445765 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 2582826 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 6767068 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 6784256 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 6819523 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 349365 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 877231 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 1460160 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 1552718 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1918260 66559196 ~ 66560517 (-) True G737449

Expression Profile