RNA id: XM_021613313.2


Basic Information

Item Value
RNA id XM_021613313.2
length 2250
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110530340
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64657845 ~ 64665706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAATGCGCCCACCACCACGCCTAGTTCCTCCAGGGGGTTATATATTCCACAAAACCATTCCAGGTGCATCTCATGGAGGGGCAGCAGTGGAACAGTGAAACACTGGACAAACTTCACTCCCAGAACTCAATCACATTATGGATTACTTGCAGCTACCAGAAAACATAATTGAACATGCTAAACCAGGTGGGCAGGTTTTGGCAGAGAGTAAGCAGCACAGAAGCTCCTCTGACATCAACCCTCCACAGACAGCGAGTGATAACACCTGCAGCATAACCAAGGACTTCAGTTGCATCTACAgcaaagATCTACTCCCTGCTCTCAGTGGTGAGGACACAACCAAAAGTTTCTTCCAAGAGCTGGTGAACATTCTCCTCAGCTATGTCTGCAAGTCGTTCAGACGGAGCTCCAAAGTCCTGGACTTCCACCACCCTCACCAACTCAGAGAGGGCCTGGAGGGCTTCAGTCTGGAGCTCCCAGACCAGCCCGAGAACCTGGAACAACTCCTGGTCGACTGCAGGGACACCTTGAAGTATGGAGTCAAAACAGGTCACCCACGCTTCTTCAATCAGCTGTCATCAGGTCTGGATGTCATCGGTTTGGCCGGGGAATGGCTGACATCTACTGCCAACACAAACATGTTTACTTATGAAGTGTCCCCAGTGTTCATTCTGATGGAGGAGATTCTACTGAAGAAGATGCAGGAGATTGTGGGTTGgtcagaggaagagggggatggtGTTTTCTGTCCAGGTGGGACCATGTCCAATCTGTACAGTGTACTACTGGCCAGATACCACTTCTTCCCTGAAGTGAAGACCAAAGGGATGACTGCTCTGCCCAGGCTAATCCTCTTCACATCAGCACATAGTCATTATTCAGTCAAGAAATCTGCAGCAGTCCTTGGGATAGGAAGTGAAAATGTTGTGGTGGTGAAATGTAATGACTGGGGGAAAATGATCCCTGCAGAATTGGAGTCAAGTATCATTACTGCCAAAGATCAGggtTGTGTCCCATTCTACGTCAATGCCACAGCAGGCACCACTGTGTACGGAGCCTTTGATCCTCTCAATGCCATCGCAGACATCTGTGAGAGCCATGGACTCTGGCTGCATGTTGATGCAGCCTGGGGTGGAGGACTGTTGATGTCCAACCTGCACCGTGTGAAACTACAAGGGATTGAACGAGCCTGGTCTGTGACTTGGAACCCTCATAAAATGATGGGTGCTCCGCTGCAATGCTCAGCCATACTGGTGAAGAAAAGGGGCCTCTTGAAAGACTGCAATCAGATGTGTGCTGAATACCTTTTCCAAACTGACAAGCACTACGACACCTCTTATGACACCGGAGACAAGACCATTCAGTGTGGCAGGCATGTTGATGTCTTCAAGCTCTGGCTCATGTGGAAGGCCAAGGGTTCAGAAGGCTTCGAATCACAGGTCAATAAATGTTTGgaaaatgctgagcacttgtttgacAAACTCAAACAAAGACCAGACTTTGAACTTGTCTTCAAAAGCAAACCTGAACACAGCAACGTGTGCTTCTGGTACATCCCACCAAGTCTGAGGAACATGTCCCCAGGTCCTGAGAGGAACAGGAGACTCCATGAGGTGGCACCAAAGATCAAAGCCAAGATGATGGAGCAGGGGATGGCCATGATTGGCTATCAGCCACTCGGAGACAAAGTGAACTTCTTCCGATGTGTCTTCTCCAACCCGGCCACACAGACAGAGGATGTGGACTACCTGTTGGAGGAGATCGCTTCTCTTGGTCATGACATCTGCATCAGGGCTGAAACCGATTTATGAATCGGGTTGGGTGAATAAGGATTTAGACCACTTTATGAATCAGATTGTGGCTCAGATCAACTTTAAAACATGCGTTTAGAATTATTCTCAAATGTTTTATTGCGTaaatattcattttttttaaatattcaaaTTTTGTATTTCAGATTATCAGGTAGTCAGTTAATTTCTACATGCATTTTGTGTACAACAATATTGTatctaacaggacaatgaacattgtttaattttttaaatataatttctcAAGTTTGACATTTTAAAATATCAATGTTAAGTAGGCAACAGTTGATGCTGTAATTGTATTAACCGATGGGTTGTTAGTGTTTATCATATTGTCATCGTGTGTGGTCtaaaatgttacattttactAAAATGTCCAACATCATCTGTAGGTGAAGACAGATTTGAACAAATACAATCACAAAGCTCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834556 lncRNA downstream 32545 64624877 ~ 64625300 (-) True G734936
TU834553 lncRNA downstream 35999 64621551 ~ 64621846 (-) True G734933
TU834552 lncRNA downstream 38935 64618686 ~ 64618910 (-) True G734932
TU834550 lncRNA downstream 42285 64615360 ~ 64615560 (-) True G734930
TU834534 lncRNA downstream 51902 64605546 ~ 64605943 (-) True G734920
TU834689 lncRNA upstream 156642 64822304 ~ 64822678 (-) True G735049
TU834721 lncRNA upstream 176828 64842490 ~ 64842697 (-) True G735081
TU834807 lncRNA upstream 225142 64890804 ~ 64891051 (-) True G735166
TU834833 lncRNA upstream 242456 64908118 ~ 64908398 (-) True G735192
TU835553 lncRNA upstream 269374 64935036 ~ 64935267 (-) True G735830
XM_021613301.2 mRNA downstream 16909 64630945 ~ 64640936 (-) False LOC110530336
XM_021613302.2 mRNA downstream 16909 64630945 ~ 64640936 (-) False LOC110530336
XM_021613303.2 mRNA downstream 16909 64630945 ~ 64640936 (-) False LOC110530336
XM_021613304.2 mRNA downstream 16909 64630945 ~ 64640936 (-) False LOC110530336
XM_036985968.1 mRNA downstream 16909 64630945 ~ 64640936 (-) True LOC110530336
XM_021613315.2 mRNA upstream 3808 64669470 ~ 64685654 (-) True LOC110530341
XM_036985975.1 mRNA upstream 45805 64711467 ~ 64719874 (-) False c8h5orf22
XR_005052932.1 mRNA upstream 45805 64711467 ~ 64719874 (-) True c8h5orf22
XM_021613319.2 mRNA upstream 92738 64758400 ~ 64794147 (-) False cdh6
XM_021613320.2 mRNA upstream 92738 64758400 ~ 64794153 (-) False cdh6
TU831229 other downstream 2472665 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 2609726 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 6793968 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 6811156 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 6846423 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 324639 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 852505 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 1435434 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 1527992 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1893534 66559196 ~ 66560517 (-) True G737449

Expression Profile