RNA id: XM_036985975.1


Basic Information

Item Value
RNA id XM_036985975.1
length 2921
RNA type mRNA
GC content 0.44
exon number 9
gene id c8h5orf22
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64711467 ~ 64719874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGACTAAAATATAAAAACGACAATTTTAATGCATGACATATGCTCCAGCTATTCGACCGTGTTTCCAGTCGGTGTAAAAGAGACGGTGGACACTATCACACCAATCACAAGCTGGCTTTCAAATACCAGCCAATAGAAAGTCAGACATAGGAGAGAGAGGCGGTCGTGTTTGGGTTTTGTTTTCAGACAGGTGTCGCATGCAAACCTAAGTCTTCCTAGCTAATATTTCAGAGATTATTTGAAATTTACCTAGTTCACAAGTATAAACAACATCGGACTGAAAAATGAATTGTCCGCCATCGAAAAGGGTTTATGCCGATTTGCCCATATGGATCGTAGAAGATCACTGTGATGTGGTAAGTCCTATATATCGGGCTATAGCATCAAGGCACTTGCCGCTGAAGAACATCAAGATGGTCCATCTGGATTCCCACCCAGACCTCCTCATACCTGTCAATATGCCTGCAGATACTGTGTTTGACAAGGACTCCTTGCTCAGTGAGCTGAGCATTGAGAACTGGATCATGCCCATGGTATATGCTGGGCATGTGTCTCACGTGGCATGGCTCCATCCCTACTGGGCACAGCAGATCAAGGAAGGCGAGCACTCCTTTTCTGTGGGGAAAGACTCCTCCACAACCACCATCAGAGTTACAAGTAAGGACGATTACTTTTTAAGTGACGGCCTGTATGTTCCTCAGGATCAGCTGGAGAATCCTAAACCTCTGGGACTGAGTGTTGTCTTAGTGAACCCTGTGGCGTGTTGCCAGAGGGAAGACATGGGAAGGGACATTGAGAAGAGCTCTGCCAAAAGACCCAGGATAGAGAACAAGGGAGCTGGGGATTTGAATGATGCTCAACCCTCTGCTTCAGCTTCCAAGTCTGAAAGCAGCTCTAGTAGCTGTGATGACAGTGTTCAGCCACCAGGTGGCAGTATAACCCCAGGGAGCAGCAGCAATGGCAACAACAGAGAAGAGGAAAAGGAACCACTCAAAAAGCCTTGTTTGAAGACTGACAAGGATGTGGGTTCAATGACCTACGCTGTGAACAGCCTTCTCTCCGTTATCAAACAAACTGATCCATACATACTTGACATCGACCTTGATTTTTTCTCTTGTAAGAATCCTTTCAAGGAGATGTATACACAGGATGAGTACAATATTCTACAGGAGCTATACAGCTTCAGGAAACCTAGAGAAGACCCAGATGAGGAGGAGTTGACAGAGTGTGTGGAGAGACGTATCCGGCAGCTGGAGGATCTGGAGGCAGCATTTGCAGACCTGGTGGAGGATGATAGTGAGGAGACAGTCAAGCGCTGGGCTGCCAACCCTGGGATGACCTCTTTGGTAAAACTGGTGGGAAGCCTGCGGAGTCGAAACGAGGCCCCTGACTACGAAATGgtgcACCAGGCGGGGCTGACCTGTGACTACTCGGAGCTGCCCCACCACATCAGTAGTGAGGAGGAGGTTGAGAGACTGGTCCTGGCAGTGGAGCTCGTCCTGGAGGCCCTGCCGAAGCCCACCCTTGTCACTGTCTCCAGATCCAGTCTGGATGAGTACTGCCCAACTGAACAGGTAAACTCCATCCAGAGTAGGATACTAGCCGTCCTGGAGTCTTTATATGGCTCATTGGATGTCCATAAGGAGTACGAGACGAAACCAGAGGACAACCTGCCCAAGGCATCATGATACAAATCATCCTCATTTGTGATGCATCCATCAAATGACTGACTTTCACTCAGAAATCATGCACTGGTGTCAGTGTGAGGATTCAGCCTGAAGATACACACATTACTGACTTTCACTCAGAAATCATCCACTGGTGTCAGTGTGAGGATTCAGCCTGAAGATACACACATGACTGACTTTCACTCAGAAATCATCCACTGTTGTCAGTGTGAGGATTCAGCCTGAAGATACACACATGACTGACTTTCACTCAGAAATCATCCACTGGTGTCAGTGTGAGGATTCAGCCTGAAGATACACACATGACTGACTTTCACTCAGAAATCATCCACTGGTGTCAGTGTGAGGATTCAGCCTGAAGATACACACATGACTGACTTTCACTCAGAAATCATCCACTGGTGTCAGTGTGAGGATTCAGCCTGAAGATACACAGATGTACTAGTTCATTTGAAAGGCTTTAAGTTTAaagtatgaattaatggttgaaAATCAAGATAGCATGTCTACCTGCTCCTGTTATTTTAGTTTTTCCTCAGGTAGGCAGGTGTATCAAACATATCTATATATCCCATGACCATTGTTACTGATACTGTACAATTTAATGAGGACAGTTTTTATCATTTGTGTTCCATTACTTGTTTGATACTTTCTTGCCCAGTCCAGACAATTTCATATGCAGGCATAATTCACTAAGTGAAAATTTGACTATGGAGCCATTTTACACTAAATGCAGTGATTGCACTGGCAAATTGTTCAACTGTATCTGTCGGAATTTTTCATTTAAATTAAtattaattttatttttatttccctTTGCTCATTTCGCAAATCTTTTCCATAGATGCATCCCTTCAATACAATCTGAGGAAGTGCTGAGGactcttttttttaaaatatttgttttattagttTTTTTCTACTTCAAAGCAGCAAATGAGTATGATTAGATCCTATCCTACCCCACCCACTTCGGTTTGTTTGCTCCCATTGCCAGTTGCTTAGCAACTCTATTCAGTACTGTCACATTTTCATCTCACTGTTTGTACAAATGTATAAATAGATTATTCTCTCGGTCAAGACTATTACATATTATTACAAAACTTTAATGTCTTGGCTGTCAATGCAGAGTACAATTTGTCCCAACTACAACACTGTCATTTTGAGTGTACAAGAATACCTATTCATGGTTGTACATGAATATATGAAACTTAATTTAATGTTATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834556 lncRNA downstream 86167 64624877 ~ 64625300 (-) True G734936
TU834553 lncRNA downstream 89621 64621551 ~ 64621846 (-) True G734933
TU834552 lncRNA downstream 92557 64618686 ~ 64618910 (-) True G734932
TU834550 lncRNA downstream 95907 64615360 ~ 64615560 (-) True G734930
TU834534 lncRNA downstream 105524 64605546 ~ 64605943 (-) True G734920
TU834689 lncRNA upstream 102430 64822304 ~ 64822678 (-) True G735049
TU834721 lncRNA upstream 122616 64842490 ~ 64842697 (-) True G735081
TU834807 lncRNA upstream 170930 64890804 ~ 64891051 (-) True G735166
TU834833 lncRNA upstream 188244 64908118 ~ 64908398 (-) True G735192
TU835553 lncRNA upstream 215162 64935036 ~ 64935267 (-) True G735830
XM_021613315.2 mRNA downstream 25813 64669470 ~ 64685654 (-) True LOC110530341
XM_036985970.1 mRNA downstream 45761 64657845 ~ 64665706 (-) True LOC110530340
XM_021613314.2 mRNA downstream 45793 64657845 ~ 64665674 (-) False LOC110530340
XM_021613313.2 mRNA downstream 45805 64657845 ~ 64665662 (-) False LOC110530340
XM_021613304.2 mRNA downstream 70531 64630945 ~ 64640936 (-) False LOC110530336
XM_021613319.2 mRNA upstream 38526 64758400 ~ 64794147 (-) False cdh6
XM_021613320.2 mRNA upstream 38526 64758400 ~ 64794153 (-) False cdh6
XM_021613321.2 mRNA upstream 38526 64758400 ~ 64794173 (-) True cdh6
XM_036984497.1 mRNA upstream 410100 65129974 ~ 65135673 (-) False cahz
NM_001124221.1 mRNA upstream 410103 65129977 ~ 65135570 (-) True cahz
TU831229 other downstream 2526287 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 2663348 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 6847590 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 6864778 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 6900045 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 270427 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 798293 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 1381222 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 1473780 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1839322 66559196 ~ 66560517 (-) True G737449

Expression Profile