RNA id: XM_021613321.2


Basic Information

Item Value
RNA id XM_021613321.2
length 4514
RNA type mRNA
GC content 0.46
exon number 13
gene id cdh6
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64758400 ~ 64794173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTCCGACTCAACTTCTAGGCTGAGAGAGCAAGGGATGCTCATCATgaactaaagagagagaaagagagagcaagagaaggcAGGCACCAGTCCGCGTTCAGTGAGTCAGTTGCATGCAACGGATTCACACAGGCGCGCATTGATTGAGCTTTCAGCTACGTCAAACATTGggctgtggtggtcacgaAGTTTCGTCAGCAGGTAAttgcaaataactgtcggtctcacgGTTCCAACACAGCCATCAAGGAATAGGACAATGAGGGTGAAGCCCAGCTCCCTTATAGGATGTAAATATCAGGGCAGATAGAGGCTTGGCTTTTTGTGCAAACACCACAGTTCCACTATGAGGACTTGCTTGCTGGTCCTGCTATGGGCGTCCCTGTCCCTCTACGTGGATAACATGTCTATTACCAGAAGGATTgtggtggagatgggagagatggaaggagagaaggaggaggacagagatggaggaaagggagagaagctACTGAAGCGTTTCAAACGAGGATGGATGTGGAACCAGTTCTTTCTACAGGAGGAGTACACTGGGAGTGACAAGCAGTACATTGGCAAGCTCCAATCCGATATGGACAGGGGGGATGGAACCCTGAAATACATTCTAAGTGGGGACGGGGCTGGAGACATATTTACCATTGATGAAAACAATGGCGACCTCCATGCCAATAAGAGACTGGACAGAGAGGATAAGGCCTTCTATACCCTCCGAGCCACCGTGGTCAACAAGAACACAGGCATAAAACTGGAGCCGGAGACAGAGTTTATTGTTAAACTCCATGACATCAACGACAACGAGCCAATATTCACTGAGGAGCTTTACACTGTCAGTGTACCAGAGAGGTCCAATATGGGTACTTCAGTCACCCAGGTAACAGCCACGGACGCAGATGACAGCATGTACGGGAACAGCGCTAAACTACGATACAGCATCAGCCAGGGGCACCCGTACTTCTCAGTGGAACCCGACACAGGCATAATCCGGACAGCCCTGGGGCCTGGAGAGATGGACCGGGAGAAGCGGGAACACTACCAGGTAGTGATTGAGGCCAAGGACATGGCGGGCCAGAGGGGCGGCTTAACCGGGACCACCATGGTCAATATCACCCTGACAGACGTCAACGACAACCCCCCGCGCTTCTCCCAGAGCATATATCAGTTCAGCGTTCCAGAATCCATGAAAGCTGGAACTCCTGTTGGCAGAATCAAAGCAGTGGATAAAGATCTTGGCAAGAATGCAGAGATGTTCTACAACGTTGTCGGCGGGGATGGCTTGGACATGTTCGATGTCATCACAGACAAAGACTCACAGGAAGGCATCATTACTGTTGGAAAGCCATTGGACTATGAAAAGACTCGATCCTACACACTGGAGATCCAGGTACAGAACACTCAGACCTTGGACACTCGTTTCCTAGGGTACCTACCCACCAAGGACATGGCCACAGTCAGGATTGGTATAGAGGATGTGGATGAGCCTCCTCTGTTTGAGAGAGCCAGCTACGTGATGGAGGTGAAGGAGGATGCAGCCGTGGGTACTGCAGTAGGGTCTGTCAGGGCCATGGACCCGGATGGATACAACAGCCCAGTCAGGTACTCCATTGATCGTCGCACAGATCTGGACCGGCTTTTTAACGTGCATTCTGGGAATGGGTCCGTATTCATCACAAGACCTCTCGACCGAGAAGAAGCTGCCTGGCACAACATTTCTGTTATCGCAACAGAGTTCAACAAACCTCTGCAGACCAGTCGGGGGCCTGTTTATATCCGCCTTCTAGATGTCAACGACAACGCACCAACATTTGCCTCTTTCTACGAGACGTTTGTTTGTGAAAAGACCAAGGCTGGACAGAAGATCCAGACGGTGAGTGCGCTGGATGCAGATGACCCCGCAGGTGGACACAAGTTCTTCTTCAGTCTGGCTACGGAGGGAGCTTACAGAGGCAACTTCACAGTCAGAGACAATGGAGATAACACAGCTGGCGTCCTAACCCGGCGCTCCAGCTACAGCCGACTGCACAAGAGCGTCTACCTGGTTCCTGTGGTGATCACAGACGGGGACTTCCCCATGCAGAGCAGCACGGGGACGCTGACGGTGCGCGTGTGCACCTGCGACCGCGAGGGCAACATGGAGCTGTGCAACGCCGAGGCCCAGACCAGCTCAGCTGGACTCAGCACCGGGGCCCTGGTGGCTATCCTGCTTTGTGTTATTATCCTCCTCAtgATCATAGTTCTGTTTGCGGCACTGAAGAAGCAGAAGAAAAAGGAGCCTCTGATCATCTCTAAAGAGGACGTGCGAGACAACGTCGTCAGCTACAACGACGAGGGGGGCGGAGAGGAGGACACCCAAGCCTTCGACATCGGGGCTCTGCGTAACCCCGAAGCCATCGAGGAGAGCAAGCAGAGGCGGGACATCATCCCCTCGGACACTCTGTACCCCcctctcagacagacagtcatTCCATCGCGGGACAACGCCGATGTCCGGGACTTCATAAACCAGCGGGTGCAGGATAACGACAATAACCCCACCGCCCCCCCTTATGACTCTCTGGCCACATATGCCTACGAGGGAACCGGTTCAGTGGCTGAGTCTCTCAGCTCCCTGGGGTCAGCTTCCTCTGAAGGGGACCAGGACTACAACTACCTCAGTGACTGGGGGCCCCGCTTCAGGAAACTGGCTGACATGTACGGGGCTGAGGACAGCGACCGTGACTCCTAACACACTACCTGACCTGTTTCTGGGGCCGGAGCTAGGAGGATGAACTATGAACTATAACTGACTGTAATCTCTCTTCTCAGAAAATGAGGACAAATGTTGCAGCCCGAGTTTTTTACAAAGTGCCCTTTTATTTCTTCCAACGCAATTATAGGCCATAGCTCTTTCTGATGGCCAGACCAGATAGAGACTGTGCAGCTGTGTGGAatctttttttttactattttaatgCAAGGCCAACTTTTCCAGAGAAGGTGAACTTCAGTTAATGATCCTGAGTTCAATGTCAAAATAAActataaatatatacatgtatttttattttctgGTTACATCTGTATCTATATGCTGCATTGGAAGGGATTACACATTTCTCTGAATAATTCTGTGTATTCTTGAGAGATATCTCCTATAGTTTCCCTGTACTGTTACTGAAGTGCAGTATGTTGTACTTTGTATATTTGAGTGTTTTAGTGAATTTGAACTTTGCTTTTCCAGGAACAAGGAACTGGAATTGAACATCTCTTTAGGTAATTCTTCGtaccttattttaaaatggccAAATACTTTAAAAGGCAGGAAAGCCCAGGaccaaaataaaacatttcttcATGAAAGTTTATGGAACTTGGGCAGCCACCCTGTACTTACTCCATTCCCCTATCAAGCCTTCTGAAGCACAGAAAGTTCACTATTCCAATTAGATTCGTCCATTTTTTGGAACTGTATTCAAGAGTAACTCTCTGAAGACATGATTTGATACAAggactgtatgtgtgtatctctGCACATGATGATGAATGAAGAAATGGATGGAGATGAGGTTTGATGCTCTAAGATTTACAGCCAATTTCAGCAACATCTGACAACATCGACATAATCCATCACAAATCAATAATGGTCATATTAGACATGTTTATGGGCGCAGcgataaatatatatacacatactgtatgtcttacTTACATAAATTCTGCACAAAAAGCCTACAAGGTGAATGAGCATACCACCAGAGAAGGAGATTGGCTGAGAAAAACAGACATTTTAACTCTTCATGTTTATAGTACAGCTTATACTTTACAGAGAGAAAGCATTTACATGAAGAATTACCTAACATCCTTGAAAAGAACCAAAACTATAGAAAGCATCTGAAGTAAATATTTCATTCAGCCATGTGTTTGCTAattgttctgttctctctctgacaacATTGGATGATAATGCTTTTCACTCTCTGAACTCATATCATACTTAGTAGCTAAGCGAACATAAGCAATCACTCCAAAACAACTTCATCATTAAAGAAGTTGAGACGGGATCCAAAGGATCAATTACAACTGATCTGCGCTTCGACTTTGAAAGTGTTTGTGGATAATGATGTGTTGGGTATTTGGGTACATCATTCTGATTTGACATCAAACTTTTCTCTGTAAAATTGTTTGACTAAATAATGGTATATACTGTGGTTGAAACTGTGCTTTGTGGCAGTGATTTGAGAGCATAGCTGATGTTCATGATGTACTACTTTACTTTTTATGTTGTGATTTTCTTTGTACCAAATATATATAGGACACATGCTGAATTAATATTGTTGAAACACAAGCATCCAACCAATATCTGTTTTTGATGTATTTTGGAGTTGTACAACTAAATGTGGACACTACAGGCTACAGTACATGTCATACTATGATGTATTAACAATTGTCAAATTTTACCATAATAAACTTTTCCAGTAAACCACAAAATAAATGCTCATCGAATTAGATTAAAA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06798 CDH6; cadherin 6, type 2, K-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834556 lncRNA downstream 133100 64624877 ~ 64625300 (-) True G734936
TU834553 lncRNA downstream 136554 64621551 ~ 64621846 (-) True G734933
TU834552 lncRNA downstream 139490 64618686 ~ 64618910 (-) True G734932
TU834550 lncRNA downstream 142840 64615360 ~ 64615560 (-) True G734930
TU834534 lncRNA downstream 152457 64605546 ~ 64605943 (-) True G734920
TU834689 lncRNA upstream 28131 64822304 ~ 64822678 (-) True G735049
TU834721 lncRNA upstream 48317 64842490 ~ 64842697 (-) True G735081
TU834807 lncRNA upstream 96631 64890804 ~ 64891051 (-) True G735166
TU834833 lncRNA upstream 113945 64908118 ~ 64908398 (-) True G735192
TU835553 lncRNA upstream 140863 64935036 ~ 64935267 (-) True G735830
XM_036985975.1 mRNA downstream 38526 64711467 ~ 64719874 (-) False c8h5orf22
XR_005052932.1 mRNA downstream 38526 64711467 ~ 64719874 (-) True c8h5orf22
XM_021613315.2 mRNA downstream 72746 64669470 ~ 64685654 (-) True LOC110530341
XM_036985970.1 mRNA downstream 92694 64657845 ~ 64665706 (-) True LOC110530340
XM_021613314.2 mRNA downstream 92726 64657845 ~ 64665674 (-) False LOC110530340
XM_036984497.1 mRNA upstream 335801 65129974 ~ 65135673 (-) False cahz
NM_001124221.1 mRNA upstream 335804 65129977 ~ 65135570 (-) True cahz
XM_036985984.1 mRNA upstream 475823 65269996 ~ 65290375 (-) False c8h10orf67
XM_021613330.2 mRNA upstream 475823 65269996 ~ 65290810 (-) False c8h10orf67
XM_021613331.2 mRNA upstream 475823 65269996 ~ 65290810 (-) True c8h10orf67
TU831229 other downstream 2573220 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 2710281 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 6894523 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 6911711 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 6946978 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 196128 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 723994 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 1306923 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 1399481 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1765023 66559196 ~ 66560517 (-) True G737449

Expression Profile