RNA id: XM_036984497.1


Basic Information

Item Value
RNA id XM_036984497.1
length 1904
RNA type mRNA
GC content 0.44
exon number 8
gene id cahz
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65129974 ~ 65135673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCCAAACCCACCCACTtgatgtaggcctactgtcagGAGGGGAAGTCTATATAAACCCTCGCAATTGTTATTTCAAGGTTAGCACAAACTGGATCCTTGTATCTTGGTTTTACAATTGAAAGGGATTATATTGCATAGGAACACAAGTCAATAATCATGTCTCACAGCTGGGGATATGGACCATCTGATGGACCTGAGAAGTGGTGTGATGGCTTTCCTGTTGCTAATGGACCCAGGCAGTCTCCTATTGATATTATTCCTGGTCAAACCTCCTATGATTCTACCTTGAAGCCCCTCAAACTGAAATATGACCCATCCAACTCCACAGACATTCTGAACAATGGCCATTCCTTCCAAGTTGGCTTTGTGGATGATGTTGACAGTTCAACACTGACCGGAGGCCCCATCACTGGCATATACAGGCTGAAGCAGTTCCACTTCCACTGGGGCGCCAGTGACGACAGGGGCTCTGAGCACACCGTCAATGGAATCAAGTTCCCCTGTGAGCTCCATCTGGTGCACTGGAACACCAAGTACCCTAGCTTTGGTGAGGCCGCTAGTGAACCCGATGGACTCGCTGTGGTTGGAGTGTTTCTGAAGATTGGTGCTGCAAACCCCAGACTGCAGAAGGTTCTCGATGCTCTGGGGGCCATCAAATCAAAGGGAAAGCAAACTACATTTTCCAACTTTGATGCCAAAACTCTGTTGCCTTGCTCACTGGACTACTGGACATATGATGGCTCCCTGACCACTCCCCCTCTGCTGGAGAGTGTCACCTGGATCGTCCTGAAGGAACCGATCAGTGTCAGCCCTACCCAGGACAATGCGAGACCCACATGGTTTACAACGAGGCTCAGGTGAATTACTGACCAGAGAGatgGGTAAATTCCGCAGCTTAATGTTCAGTGGTGATGGAGAGGCACCTTGCTGCATGCAGGACAACTACCGGCCCCCTCAGCCTCTCAAGGGACGCAAGGTCCGCCGGTCCTTCAAGTAAACAGCTATGCATCACGCCATCCCCCATCCCACCATTGCCGATCCCCAACCTTTCCcctagattatatatatattgtgtgccATTTTATATGCATTGCGATCAGAATCTGCAGATTGTTAACCCTATAGACAATACAATCAGTAATCAGAAAACAGAAAggaaacctaaacctaaaccaaTGCAGTTTAATAACAAGAGCCAGTGTAGATGAGATTATTGTGCCGATATGGATGGACAGCACTTTATACGcctggcctgcctgcccctcctgtaatccctgaCGATAAACCTCAGGATCACCCCAGATTAACGTCATTTAGCTGCCTGTCACTGCAATAAGAGACGACTGACTCAGTCAGTCAGCCCGTCAGAGATAGAGGCCTTTTATAGTATAATACTACTGGGCTTCTACTCTCAATAAGCACAAGGAGAGATGGAATCTTGAATTACATGCCTTCAATTTTTGGATTGTGTCTCTAAATCGTCATCAGTGTTTTTACTTTAGATTACAGGTCAATACTGAAAAGAAGAGATCCAATTCAAGTGATTATTTTTTTAACGACTCATAACTTACTACCTACCCCAGTGCATTAACATTGTGTCTTAAAATCATGAGAGTGAAAGAAGATGTTGTGTGAGATGTCATATCATCCAAGTCCATCCATTGAAAGAAATCACTGACTGAGGGACTAGAGTAATGTGTGTTTTAGttttatttaaataaatgttatattgaAAAATGTAATCTTGAagtatgttttaaatgtttttggaaatacctggaatgatttttaagccttgcgTATAATTAATGTTAAAATGGGAATGGAAGGTTTGTGTGATTCGTTCATGTCAAATTTGATGGATGGGAATTTGATCAGTGAAATAAATGGCATAACTGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU835701 lncRNA downstream 3812 65122982 ~ 65126162 (-) True G735971
TU835586 lncRNA downstream 162849 64966805 ~ 64967125 (-) True G735863
TU835576 lncRNA downstream 174557 64955134 ~ 64955417 (-) True G735853
TU835572 lncRNA downstream 179000 64950747 ~ 64950974 (-) True G735849
TU835562 lncRNA downstream 186947 64942729 ~ 64943027 (-) True G735839
TU835791 lncRNA upstream 115177 65250850 ~ 65251189 (-) True G736049
TU835881 lncRNA upstream 247555 65383228 ~ 65386534 (-) True G736134
TU835942 lncRNA upstream 336820 65472493 ~ 65472965 (-) True G736188
TU835944 lncRNA upstream 339316 65474989 ~ 65475294 (-) True G736190
TU835949 lncRNA upstream 348010 65483683 ~ 65484315 (-) True shhb
XM_021613321.2 mRNA downstream 335801 64758400 ~ 64794173 (-) True cdh6
XM_021613320.2 mRNA downstream 335821 64758400 ~ 64794153 (-) False cdh6
XM_021613319.2 mRNA downstream 335827 64758400 ~ 64794147 (-) False cdh6
XM_036985975.1 mRNA downstream 410100 64711467 ~ 64719874 (-) False c8h5orf22
XR_005052932.1 mRNA downstream 410100 64711467 ~ 64719874 (-) True c8h5orf22
XM_036985984.1 mRNA upstream 134323 65269996 ~ 65290375 (-) False c8h10orf67
XM_021613330.2 mRNA upstream 134323 65269996 ~ 65290810 (-) False c8h10orf67
XM_021613331.2 mRNA upstream 134323 65269996 ~ 65290810 (-) True c8h10orf67
XM_036985986.1 mRNA upstream 253875 65389548 ~ 65408607 (-) False paxip1
XM_036985989.1 mRNA upstream 253875 65389548 ~ 65408613 (-) True paxip1
TU835604 other downstream 89733 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 2944794 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3081855 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7266097 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 7283285 57820047 ~ 57846689 (-) True G726900
TU835971 other upstream 382494 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 965423 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 1057981 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1423523 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 1578020 66713693 ~ 66714496 (-) True G737422

Expression Profile