RNA id: XM_021613331.2


Basic Information

Item Value
RNA id XM_021613331.2
length 3198
RNA type mRNA
GC content 0.40
exon number 16
gene id c8h10orf67
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65269996 ~ 65290810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCATGACAGTGCGCGCGTCAGTGTTGcaagccagctagctagttacaatGTGAtgtaaaaaaatgaaaataagaattgttcGATAATCGTGGCTGGAGAGATTTGACACGTCTACCATTCAAATAACTAGCTCAATGACCATTTAAAGTAAATAAGATAGAAACAAGTAGAAAATCATACCTGCTCCTGATGAGAGCTAGTTTCCCAGTTGTCCAAGTAGCTATAGCAACACCATACTCTGGAGTGGCAAAGACAAGCTAGCAAATcaactagctagcaagcaagtgATTTTGAAACACAAAATCTGTCTGACATTCACGGTCATGAACCTCGTGTGTAAACAAAAAAAGATGTGTATGAATGAGGACGAAGAGGAGCTATTTTCTAAAGAAATAGAGGAAATTCGCAAGTTTTCACTGGGGAATCAATTGAGGGTGGGATTCTTTGGTCCAGATGCTTCTGTCCAAACCGATGTCTCAGAATTACCCACTGTCAAGTTACTATCTGACCACACTGCTGAACTTATAAAGTTCATACAGGCACACTATGAGTCCAAACTTCAGCAAGAGGCAGAGTCCTTGTATACCAGCATGAATGACAAAGTGAAGAGTTTGGAGAATCATCATAAGGAGAAAGTAAAAGTTATACGGAGAAGTTATCAACAACAATTCAATGATGCAATCCATGTGATCAGAGGCAGCTACAAGAATTACTACCTTAAAAAAGGAGAAAATGTAGCTGCTGTTGCTAGTGAGACAGGGAGGCTGAAAGATCTGATGAATGAGATCCAAGAGAAGAACTTGAAGATCACGTGTATGAGTGAACAGCTGAGGGAATATGAGGAGAGAGTCTTCACAAAGattAGCTGTGAGGCTGTGGATGACCCGGATAAAGAATGGCTGAGACAAGAGAATCAAAAGCTACAAGACGACATTGACTCCATGCACATTGTCATGGACCAGGTCCGCAATTCCTTGGAGGCTAAAGAGCAGCAGTTGGAAGATCTAGCACATAATCTAAACGATGTGAAAGCAAAGTTAGAGGACGAGAAAAAAGCCCTGCAAAAGATGACCAGTGACTATGATCATCTGAAAGTACAACTCAGCATTGAGAAGGACACCGCCAGAAACAAGATGAAGTCGCTAAAACAAGAGCTGGAAAAAGAAATACAAATCATTGAAGACTTCCGGAAGAGTGAGAAACTTGCTGTGGAAAAGGAAGTTAATGAGAAATTGAGTGCAGAGAAGGAGAAACAAAAAAGAGAAGTGCTTGCTCAGGAGGCCGTCTTAAAAGCTCAAGCAGCAGAAGAACAACCTGTGTTTCAGGTTGCTGAAGGGGGGGAGGAGTTGATCCAACAACTTAATGAGCTAAAAAAGATGGAGACCTTACAGAAACAAGATATAGAGAAACTCCAAAAGCAGTTGTTTCGCTGTAACGGAATATGGGAAAAGAAATTTGAGATTCTGAAGGCGAGTTTCCATGCCATCAAAGATGAGATGTTCTTGCGACAGACGTTACAGCGGCAGGCAGCTTCACTGCAACATGCCTCAGTCAACTACATGATGGACAGTGCTGGTTCTTACCAAAGTCCTGTGTACAATGGATTCAAAATGCCGAGCAGCTATGCAGGGACACTTCTGCCCAACATAGGTACTGGAGGTTTTCAGAAGATGGACAGAACCGGTGAGATCATGGACATCAGTGTGTTGAGTGGCAGAAGAACAGATTGTTCAGAATCCCAGATGGAATCAGGAGATGAAGAGGAGCTGTGTGGAATTCTTCCTCTTCCTTGCCTTCTGTCCCATACCAGGCAAAGAGCATCCCTCACATCTGCAATCTGCACCCCTTCAAAATGACAAACCTATACCAACATTTATGCTTTACAGACAATTAAACAAATTAGAAAGTTACATACATATCTGATGCATTTCAGTAGCCTAAGGCTGCATTTAcataggcagcccaattctgatcttttccccactaattggtcttttgaccaatcacatcagatcttttcacatcagatctttttcagagctgatctattggtcaaaagaccaattagtgaaaaaagatAAGAATTAGTCTGCCtaatttttctctctgccccatgcaATATTTGTACAGTTGCAGTAAATCAGTTTTAAAACAGAAACATTTTCTTTCATCCTcattggcaaaatgtgtagaattgtaggaagtTAACAGTTTTTTTGTGGGGGAGGCTTGCTCAGACCTTGCTTGGGGGGCCTGCGAAACTGTGGTACACCACTAATCCAGCCAGCCACATCTCACTTTCCCAGGCTGCATTCAGAAAAAAAGCCAAACCCCCACAGTCCGCTGCTGCCTGCCCCTTTCATGCCAAACCTCATGACATTAAACGACAGGCTTAAAATCAATTAGCAATTTCTCCTTCAATTGGATGTCATTTATTACTGATGATGGTTAGAATATGACTCTTTCACTGTCTCACAGTCCTCTTTATAAACATTATGTGATTATACATTAACTTCTTGTTATTTTCAACAGTCCATCATTTGGTGACTTTAATAAGACACTTTTACATTCTAGCCGGTCATTCAGTAAAACACTATGGATTGTAGGGTAACCATGTTGTCATAGAAACTGCTGGCATATATATTATGTCCCTTAAAAGTCTCAGGAGGGTTTCTTACTCAGGACGTTTGCCTCTTTCAGAGCTTCTGCATTGGTTGTAAGACAACAAAGTGGGGAATTTTTGTTGGACTTAAAAGTAATTGCTTTCATTAAATGCTGGATAAATAGCAATTGCTGGTATGGTGGAGTCCAGCAGAGTTTCAGCATACAGGGTTAATCAGAGTAAGTGCTGGCTGGAAACCTTCCCAACACCATGGCTCTCAGCCATCTTAACAAGTCCCCAAGTTTATGGTCACTTAGTACAGAACTACTCAGTTCAagctttaccatttgattcaacTCTTTGGAATAGAATGTGAAAAACTGGTTGTTTATAGCATAAGTTGAATAGACCCACTGTCTGCAAATTATACAATCCCTTCcaattataataatatatgcatttgtcattattgatttACACCTTGCACCATCTTTTATTCAACCTATATAGTCTACTTTCCTGAATATCTTTGAAGTATATATGGTAactttttgtaaatatatacaaGTTCTTCCATTAAAATATTATCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU835791 lncRNA downstream 18807 65250850 ~ 65251189 (-) True G736049
TU835701 lncRNA downstream 143834 65122982 ~ 65126162 (-) True G735971
TU835586 lncRNA downstream 302871 64966805 ~ 64967125 (-) True G735863
TU835576 lncRNA downstream 314579 64955134 ~ 64955417 (-) True G735853
TU835572 lncRNA downstream 319022 64950747 ~ 64950974 (-) True G735849
TU835881 lncRNA upstream 92418 65383228 ~ 65386534 (-) True G736134
TU835942 lncRNA upstream 181683 65472493 ~ 65472965 (-) True G736188
TU835944 lncRNA upstream 184179 65474989 ~ 65475294 (-) True G736190
TU835949 lncRNA upstream 192873 65483683 ~ 65484315 (-) True shhb
TU836045 lncRNA upstream 318336 65609146 ~ 65611345 (-) True LOC110530362
XM_036984497.1 mRNA downstream 134323 65129974 ~ 65135673 (-) False cahz
NM_001124221.1 mRNA downstream 134426 65129977 ~ 65135570 (-) True cahz
XM_021613321.2 mRNA downstream 475823 64758400 ~ 64794173 (-) True cdh6
XM_021613320.2 mRNA downstream 475843 64758400 ~ 64794153 (-) False cdh6
XM_021613319.2 mRNA downstream 475849 64758400 ~ 64794147 (-) False cdh6
XM_036985986.1 mRNA upstream 98738 65389548 ~ 65408607 (-) False paxip1
XM_036985989.1 mRNA upstream 98738 65389548 ~ 65408613 (-) True paxip1
XM_021613340.2 mRNA upstream 135157 65425967 ~ 65447346 (-) False cnpy1
XM_021613342.2 mRNA upstream 135157 65425967 ~ 65447346 (-) False cnpy1
XM_021613341.2 mRNA upstream 135157 65425967 ~ 65447350 (-) True cnpy1
TU835604 other downstream 229755 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3084816 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3221877 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7406119 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 7423307 57820047 ~ 57846689 (-) True G726900
TU835971 other upstream 227357 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 810286 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 902844 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1268386 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 1422883 66713693 ~ 66714496 (-) True G737422

Expression Profile