RNA id: XM_021613343.2


Basic Information

Item Value
RNA id XM_021613343.2
length 1701
RNA type mRNA
GC content 0.44
exon number 3
gene id shhb
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65483660 ~ 65486476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTGCTTTGGTAGCGGTCGTTTGATAGCCTACTAGAGTAGAGAGAAAAACGAGGACACTGATACAGGGTAGAGTGTGAGAGACTGCGAGATAAGTGAGAGGATATAGCCAGCCTACACAACAGGGACCTCAATACAATTAATCCAATGGACGTGATGCTTATACTGATAAGAATTGCGCTCGTGGGATTCATCTGCCTGTTCCTAGCATCCGCTGGGTTGGCCTGTGGTCCAGGCAAGGGATATGGAAAACAAAGACATCCGAAAAAACTAAAGCCTTTGGCTTACAAGCAGTTCATTCCCAACGTGGCGGAGAAAACCCTTGGGGCCAGTGGCAAATACGAAGGGAAGATCACAAGGAACTCTGAAAGATTTAAAGACCTGACACCAAACTACAATCCTGACATTATTTTCAAAGATGAGGAAAACACTAATGCTGACAGACTTATGACACAGAGATGTAAGGACAAACTGAACTCTTTGGCTATTTCAGTCATGAATCAATGGCCGGGAGTGAAGCTGCGCGTGACAGAAGGCTGGGACGAGGATGGACACCATTTCGAAGAATCTTTACACTATGAAGGAAGGGCTGTGGATATCACCACCTCTGACAGAGATAAGAGCAAATATGGAATGCTATCCCGGCTCGCGGTGGAGGCAGGATTCGACTGGGTCAATTATGAATCCAAAGCCCATATTCATTGTTCTGTGAAAGCAGAAAATTCAGTTGCTGCAAAGTCGGGTGGCTGCTTCCCTGGATCTGCCTCAGTTCTCCTCGAGGATGGTCGAAGCAAGCTGGTAAAAGAACTGGAGGTGGGCGACAAGGTGTTAGCGGCAGACATAGAAGGAAATATTGTGTCCAGCGATTTCCTCATGTTCTTGGACAAAGATCCAGTGTCAAAACGCGAATTTTATGTTTTTGAAACAGAGAAGCCCAACCGAAAGTTAAGACTGACCCCGGCTCACCTGGTCTTCATCACCAGTAACGTTACGGATGACGATATGACTGCAGTGTTTGCCAGTAATGTAAAACCTGGGCAACAGGTGTTTGTTGTGGATGAGGCCGTAGACCACCTGAAGGCAGTCACTGTGGAAAGGATTTACGTGGAAGAATACGAGGGATCTTATGCCCCAGTAACCTCACAAGGGACCATCATAGTTGACCATGTTTTGGCGAGCTGTTACGCGGTAATCGAGGACCACAAATGGGCGCACTGGGCCTTTGCGCCAGTCAGGTTGGGGCACGCGTTGATGTCCTTCACAGATCTAGTCAAAAAGCGCGAGGACATACGTCAGAGAGATGGAATACACTGGTACTCAGACATTCTATACCACATAGGGACATTGCTGCTGGACATAAACTCCTTTCATCCTCTAGGAATGTCCCAAAGCTGAGACTTTAGTCGTTTTTATTTGTCAATTTCAAAGACACAAATGAATGCTCTTAAAGATGGAAATACTTTTGGGCACTGGAGCCATACATGTATATTCTTATTTATTCTCTTGTTTTCCTCCTATCAAGAACCAGTCAAATTTAGTCGTCTAGGATAGTGTGAACAATCTGTGAATAATTTATTTCTAAACATTTGAGAAAAAATGTTGATGATCGTTATGTGCAAATGTGCAAATGTGAATTGACTGTTATATTTTCTTGGATGAACATAGTGTTGCCTCAATAAATTATGTTTTTATACACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU835944 lncRNA downstream 8366 65474989 ~ 65475294 (-) True G736190
TU835942 lncRNA downstream 10695 65472493 ~ 65472965 (-) True G736188
TU835881 lncRNA downstream 97126 65383228 ~ 65386534 (-) True G736134
TU835791 lncRNA downstream 232471 65250850 ~ 65251189 (-) True G736049
TU835701 lncRNA downstream 357498 65122982 ~ 65126162 (-) True G735971
TU836045 lncRNA upstream 122670 65609146 ~ 65611345 (-) True LOC110530362
TU836069 lncRNA upstream 156879 65643355 ~ 65644138 (-) True G736296
TU836071 lncRNA upstream 160608 65647084 ~ 65647297 (-) True G736298
TU836086 lncRNA upstream 181811 65668287 ~ 65670335 (-) False G736312
TU836088 lncRNA upstream 181811 65668287 ~ 65670379 (-) True G736312
XM_021613341.2 mRNA downstream 36310 65425967 ~ 65447350 (-) True cnpy1
XM_021613340.2 mRNA downstream 36314 65425967 ~ 65447346 (-) False cnpy1
XM_021613342.2 mRNA downstream 36314 65425967 ~ 65447346 (-) False cnpy1
XM_036985989.1 mRNA downstream 75047 65389548 ~ 65408613 (-) True paxip1
XM_036985986.1 mRNA downstream 75053 65389548 ~ 65408607 (-) False paxip1
XM_036985990.1 mRNA upstream 33774 65520250 ~ 65546632 (-) True LOC110530358
XM_021613349.2 mRNA upstream 122302 65608778 ~ 65637987 (-) False LOC110530362
XR_002474514.2 mRNA upstream 122304 65608780 ~ 65637987 (-) False LOC110530362
XM_021611268.2 mRNA upstream 205010 65691486 ~ 65692775 (-) False LOC110529129
XM_021613363.2 mRNA upstream 251785 65738261 ~ 65850047 (-) False LOC110530368
TU835604 other downstream 443419 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3298480 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3435541 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7619783 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 7636971 57820047 ~ 57846689 (-) True G726900
TU835971 other upstream 31691 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 614620 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 707178 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1072720 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 1227217 66713693 ~ 66714496 (-) True G737422

Expression Profile