RNA id: XM_036985990.1


Basic Information

Item Value
RNA id XM_036985990.1
length 3462
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC110530358
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65520250 ~ 65546632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTACTAATCTACACATTCGGTCACAAACCAAACCACATGAAACTTTTAAGTCCTTGTGGAAATGTCGACATGAACAGAAAAGCCTGATGAGCTCTTCAAAGACCGACCTGATGCAGAACAAGACATACCACCTGTCTATGATTCATGGAGATAATGCTACAGAGATTTCTGCCAAAATATTTGAGTGGTCTCTGCAAGGTGACACTGTAGCGTTGGGAGAGCACTCAGCCCTGCTGGGAGTCCGTGACCAAGCCAATGCCAGCCCTCTGCATTACGCCACCTCACACGGGCACATCAGCACCATACAGCTCATTGTGCAGTTGACTGGTCCAGATGAACTGAATGCCCGTGATGAGGAGGGCAACACTCCattgcactgggctgtgcagaggACCCAGAGAGAGAGCTGTGCTTGCCTGCTGGACCTGGGGGCAGACTCGAACATCCTCAACCTCCGCCTCATGTCTCCCCTACACCTGGCTGTCAGTCTCGGACACAACCCTCTCGTTGAGCTGTTACTGTCTCACAGCAACACGGATTCCAACCTGATGGGAGGCCAGGGGAACACACCTCTAATGTTGGCCTGCTCGGTTGATAACCATGAAGCTGTCCGTCTACTTTTTAAATACAGAGCCAGACTATGTCAACAGAACAAGCTGGGACATTATCCAATTCACGCAGCAGCGTTTGCGGGGGCTAAAAAATCTATGCTGGTGGTTCTTCAGAAAGGTGAGGAGATGGGTTTCTCAACTGAAATGCACATCAACTACGTGGACAAATCATTCAGCACTCCTCTTCATCTGGCCATCCATGGAGGAAACCTGGAGGCAATCAAACTCTGCATAGAACAGGGAGCAAAAATTGACCAAAAACAGTGTGACAAATCCACAGCCCTCCACTTTGCCTGCACCCAGGGAGCATCCGAGGCCGTCAAACTCATGCTATCGGCATATGATAGAGTCTGTGATGTCATCAATATCCCAGATGGAGCTAGCCAAACTCCACTGCATAAGGCAACAATATTTGACCATGTTGGATTGGCTGAGTACCTCATTTCAAAGGGTGCAGACATTAATTCCATTGACTGTAAGGGTCATACGCCACTGCTTCTGGCAACAAGCTGTAGTGCATGGAAAACAGTGGGCCTTCTTCTTACACATGGGGCTAATTTGAAAATAAAAGACAAATATGACTGCAATTTCCTTCACCTTACCATCTTGCAGCCTAAAGGTCTGAAAAACCTTCCTCCAGAAGTCTTACAGTGCAGCAATGTGAGAGAGCTCCTGGGTGCGGAGGACAAGGAGGGTTGTACTCCCCTGCATTACGCCTGCAGACTGGGAATCCCAGAGTCAGTGACGGACATGCTCGGACTCAACGTCTCGCTAGATCAGAAGTCTAAGCAGAAGAAATCTGCACTGCATTTCGCAGCCGAGTATGGGAGGATAAACACCTGCCACAGACTCCTGGAGTGGAtgacctgcaccaggctgctgaacgagggagatgagagggggatgactcccctccacctggcatcCCGAGGCGGCCATATTAAAGTGCTGGAGCTACTGCTGCGGAAAGGAGCTCTGTTCCACAGTGATTCTAAAGGTTGGACCTGTCTACATCACGCTGCAGCAGAGGGATATACCCAGACCATGATCATACTCCTGCAATCAAATATCAAACTGCTGGACAAAACAGATGAAGACATGAACACGGCGTTACATCTGGCTGCCAGGGAGGGCCATGCGGCTGCAGTGACACTGCTCCTGGGCAGAGGGGCCCAGATGACGCTCAACAAGAGTGATGCCTCCTTCCTCCACGAAGCTGTTCTCAACGGCAGGAAAGACGTTGTCTTCGCTGTCATCCACAATGAGAGATGTGCTGAGGCTATGCTATTGTTCGAAGTGAAGTCAACTAAGCGATGTGTTGTCATGGACATGATAGAGTTCCTGCCTGAGTCATTCaaaCATCTTTTGGACACTTGTGTGAAGGAGTCAGATGATGACGTGAATAGTTACAACTACTCTATCGAGTACACTTTCAAATGGCTCCAAGCTCCCATTCATGTCATTAAGCTTGGAAAAACAGACAAAAGCTACTACTTCCAGCCTCTCACTGCTCTGAACTCCATGGTGCAATTTAATTGCATAGAGCTTCTGACCCATCCTGTCTGCAAGAAGTATCTAGAAATGAAATGGAACGCCTATGGTATCAAAGTGCATCTGCTCAATCTGGCTGTCTACTCACTTGGTCTGGGGCCTCTGACACACATCATTCATACTCTGAAGCCCATCCTCAACACCAATGTCACCCGtactacatcaccatcatcatcagtaaGCATGGTGACCACCTCCCTTGATAAGCAATGCTATCTTATCACCACCTGCATGTTCCTGATTCTTGCCATGAATCTGTACACAGTTGTCAAGGAGCTGGTGCAGATAGTTCAGCAGGGTTCAAAGTACTTCCGTGATGTGACCAATGCATTAGACTGGGGTGCTGCCGTCAGTTCTCTGTTGTTTGTGATCCCTTTACTGATGGACTTCAAGGAGACATGGCATTGGGAGGCTGGGGTAGTGGCAGTTCTTCTATCCTGGATCAACTTTCTCCTCTATTTCCAACGGTTTGAACGTGTTGGGATCTACGTGGTGATGTTTTTAGAGATTGCAAAAACTCTTTTAAGCATCATTGTACTGTTCTTCTTCTTGCTGCTTGCATTTGCATTGGCTTTCTATGCCCTGATACAAGACCAGAACGTTGTTGACAGTGGATCTAGCATGCTGCTAGCAATCATGCAAGTATTTGTCATGATGGTTGGAGAACTCAACTACCAAGAAAATATCCTGAAGCCATTTCTGAACGGGATTCTGCCATTCCCTTCTTTGACCTATGCCATTTTTGTTATGTTTACCTTCGCTGTGCCCATTCTCCTCATGAACCTAATGATTGGCTTGGCTGTTGGTGACATAGCAGAAGTACAGGCGAATGCTGTGCTGAAGCAAATGGGAATGCAGATTGAGCTTCACACTAGTCTGGAGGAGAAGATGCCGTACTGGTTAATGAAGAGGGTTGACCAGGCCTCTCTCACTGAGTACCCTAACAGAGCCTACGGCAGAAAGAGAGAAATGTTCTATGCAATGCTGGGTATGGGGCATGAGAGAATACGTCTCAGCCCCACTTCCCCTCCATCTACACCTATGGAACAGGAAATCAGTAAACAGAAGTACAGGCTGAAGGAGATGTCTAATGTTATCGAGAAGCAGCACAACCTGCTGAAGCTGATCGTTCAGAAGATGGAGATCTGTtcggaggtggaggaggagcatGATGGTCCACAGCTGTTCCAGGGCTACAGGGACAAGCCCCTCCCCTCCCAGAGCAAATGGAACCCTCTGCCGAGGGCACTGGGAGCTAGGAAGTAACATCCATCACATATATTATAATGGACTGACAA

Function

GO:

id name namespace
GO:0070542 response to fatty acid biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0009593 detection of chemical stimulus biological_process
GO:0050960 detection of temperature stimulus involved in thermoception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU835949 lncRNA downstream 35935 65483683 ~ 65484315 (-) True shhb
TU835944 lncRNA downstream 44956 65474989 ~ 65475294 (-) True G736190
TU835942 lncRNA downstream 47285 65472493 ~ 65472965 (-) True G736188
TU835881 lncRNA downstream 133716 65383228 ~ 65386534 (-) True G736134
TU835791 lncRNA downstream 269061 65250850 ~ 65251189 (-) True G736049
TU836045 lncRNA upstream 62514 65609146 ~ 65611345 (-) True LOC110530362
TU836069 lncRNA upstream 96723 65643355 ~ 65644138 (-) True G736296
TU836071 lncRNA upstream 100452 65647084 ~ 65647297 (-) True G736298
TU836086 lncRNA upstream 121655 65668287 ~ 65670335 (-) False G736312
TU836088 lncRNA upstream 121655 65668287 ~ 65670379 (-) True G736312
XM_021613343.2 mRNA downstream 33774 65483660 ~ 65486476 (-) False shhb
XM_021613341.2 mRNA downstream 72900 65425967 ~ 65447350 (-) True cnpy1
XM_021613340.2 mRNA downstream 72904 65425967 ~ 65447346 (-) False cnpy1
XM_021613342.2 mRNA downstream 72904 65425967 ~ 65447346 (-) False cnpy1
XM_036985989.1 mRNA downstream 111637 65389548 ~ 65408613 (-) True paxip1
XM_021613349.2 mRNA upstream 62146 65608778 ~ 65637987 (-) False LOC110530362
XR_002474514.2 mRNA upstream 62148 65608780 ~ 65637987 (-) False LOC110530362
XM_021611268.2 mRNA upstream 144854 65691486 ~ 65692775 (-) False LOC110529129
XM_021613363.2 mRNA upstream 191629 65738261 ~ 65850047 (-) False LOC110530368
XM_021613358.2 mRNA upstream 191629 65738261 ~ 65882376 (-) False LOC110530368
TU835604 other downstream 480009 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3335070 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3472131 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7656373 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 7673561 57820047 ~ 57846689 (-) True G726900
TU836724 other upstream 554464 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 647022 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1012564 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 1167061 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1834588 67381220 ~ 67381977 (-) True G738472

Expression Profile