RNA id: XM_021613349.2


Basic Information

Item Value
RNA id XM_021613349.2
length 6883
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC110530362
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65608778 ~ 65637987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACCAGGAGCTATTCTGGCAGCGGTAGtggtgctctctctccctcccacgtACCGCTTTAGCCGACATCCACAAATCCACACAGTGACAATCATTCATCTCTGCTTGGAACAACAACACCTCAGTGCGACCACAGAATCCACCGGACTCTCACTTCAGCGCTCCTACTTTTCTTAGAAAATCCGCTCTGGACTCGCAAGCGACAGCACAATATTGGGCAGCTACCGCGACTCGTTCTTCTCCCCTCATCATCTGAATGACGGGCGGACGGTTCGACTTTGACGATGGTGGCACATATTGCGGTGGCTGGGAGGATGGGAAAGCCCATGGACATGGCGTCTGTACCGGGCCCAAGGGCCAAGGCGAATACTCGGGGTCCTGGAACAATGGTTTCGAGGTAGTGGGGGTTTACACCTGGCCCAGTGGAAACGTGTATCAGGGCTACTGGGCACAGGGGAAACGACACGGACTCGGTGTGGAATCGAAGGGAAGATGGATTTATCGTGGCGAATGGACTCATGGATTGAAAGGTAGATACGGGGTCCGGCAAAGTCTCCACACGCCTGCCAGATACGACGGGACTTGGAGTAATGGTCTGCAAGATGGATATGGAGTTGAAACGTATGGTGATGGAGGTACATACCAGGGGCAATGGACAGGAGGAATGCGACACGGATATGGTGTGAGACAAAGTGTGCCTTACGGGATGGCTACGGTTATTCGTTCCCCTCTCCGAACCTCGATGGCCTCGCTTCGCAGCGAACAGAGCAATGGCACCGTCCTCCATGCCAACCTTGACCTGTCAGACAGCCCAGCCGGCATTAGAGGAGGCTTTGTTCTCAACTTCCACAGTGAAGGCGAAGGTGAGAAGAAAAAGGGCCTGTTTCGTAGAGGGTCCCTGTTCGGAAGTCTCAGAAACCTCCGAAAGTCAGACTCCAGGTCGTCCATATCGAGCAAACGCAGCTCTGCCCCCAGTGATGCCGCCAGCTCCATCAGCCGAATCAGCTCCAGTGATGCCAACTCCACCATCAGCTTTGGAGATGGAGTTGATGAGTACATGCCCCTGGAGGACAATGTAGATGCCACCACCACAGAGTCCTACATGGGGGAGTGGAAGAATGACAAGCGGAACGGCTTTGGTGTCAGCGAACGCACCAACGGGATGAAGTATGAGGGTGAGTGGATGAACAACAAACGCCATGGCTATGGATGCACAATGTTCCCAGACGGCATCAAAGAAGAGGGGAAGTATAAAAACAATGTGTTGGCGCGAGGCATCAAGAAGCAGCTCATTCCTCTCAAAAACACCAAAACTAAACAGAAAGTGGATCGGGCTGTGGAAGGAGCCATACGGGCAGCAGCTATTGCCAGAACAAAAGTAGAAATAGCCACATCAAGAACAGCTCACGCCAGGACTAAAGGCGACGCTGCTGACCAGgccggtcagtcagccagtcaggacTCCGACATCGCCAGGGCAGTGGCCAGGGAACTGTCCCCCAACTTCCATCAGCCAGGCCCTGATTATATAAAGCAGAGGTTCAACGAACCGATTGAACCTATTGTtcaagaggagaagaaagaaaagACCCCTTCAAGTAGCCCTCATTTCTACCGTAAAGGCACAACCCCAGACAACTCTCCCACCGCGAGTCCACGGTCCTCTCCCCCACCAACACCCCCGTCAACACATACCCCGGAGCCCAAGAAGAGCTTCTTCAGCAAGCTCGCCCCCAAGTCTGGGAAAGAGAACAAGACCCCTGCAGCAGAGAGCCAGCTCCCGGTCATCACAAAGGCAGTGTCTAAGACATCGTTGAAACAGGAAGTAAGACAGGAATTGCCTCAACCGTTCAAAATGGAGGAGTCGGTCCCCGCCAGCCCTGGCAATGGACAGCTGCACACTGACACGGAGTACCACGGCTACTACGTGAAGGCAGACGTGAAGATCCCTCAAGACGAACCTGAGGACATAGATGAGCATGTTACCCCGTCCACCCTCACCCGGATGCCACCGCCAGCAAAACCTATGGCGCAGTACAGGACACCCACCCCAAAACCTATAGTGCCAAAGTCGGTATCCAAAGAAAGCAAACCTGAATCAAGACTTAAGAAACAAGATTCGTATAAGCCAAGAAGTCTAGCAGAAACTAGGAAACAAGCCAGCTTGGAGATCACCACGGATTTTGTAGAGGAAGAGTCAGGTCCAAACTCAATACTGGTTGCCCTTGTAATGCTGTTGAATATTGGTCTAGCAATTATTTTTGTCCATTTTTTAACCTGACGGAATCTGAACTGAGGGAACTCATCAAAACTAGTGGCGCAGGCCCCTATCTCTGCAGTTGCGTCAATGGCCTTTAAAAATGGCGCcggtcaggcacagacacaggcAAAGAAGGACTGGAAATAGAGTGAAACACCGGAGAAAGATGAGAACAGGACCATTCGGCCCCGACGCTGCCCCGTTTTGCTGGCGATGATTTGTGACACGCTTAGGTTCTGTGAAATCTGAAGCAAGCAGTCATTGCGAAAGCAAAAAGAAATATCTGCTGATCCAAGCTGTTACCAGTCAAGTGCGTTGCCTCTCCATCtgccctgtcaggaggaatgtggaggggggtgggagagggagggctTGACAGGATATGTTCGGAGATGCACTTTTAGTTGACGGAAGATAACAGCTGCCTTACTATTTTACCATCTGACGTTTTAGTGGGTAGAGGCAGTGCACAAGGCTGCCAGAGGAATGTGTTTCGGCAGGCTTTGCTGCCGTGGGAGTGTGTCTCTGTATTTGCTATAATATTCACTTGGTACataagattttttatttattttttaagtcgCACTCACCAGTCTTATTCCATTCCCCAGCCTTATCTAACTTCTCCTTTTGGGACATGCTTGTGCGTTGGCCGTTTCAAGTGCATTTGTTTTGTGTATTTGTTAGTAACTGTTcgttttttcatttgttttttccTTTGTTTAACCTTAGGTATTACAAATTATTAAGAGAgcgttttatttatttaagtctAGTCCATGCATTTCTCAAACTTTTTTAAGATCCTTCAAATCCAAAAGGAATTTCCCTAACACCTGTGCTACACAAAGCAGTTCTCCTTTGAAAGACATTGAAATGTTTAATTCCAGTTATTTCTACATTGTCAAATTTGAGAGTAATGTATACGAAATTGAAGCATCTTAGCAGTATACAAACACAGATTGTGCATTAACTTTTAACTAAACAGCTTGTTTTTTACTAACCAGCTATTTATTGGCTGGCTGCATGTAACACAAATGTATGAGGTTACATAGTTAATCAACACTGATTTGTGATTGAAAAAAATGGACATTTATTTTCTGATTAAGGGCTAACTGGTGATATGGAATAACTTTCCTCCTGATTCAACTTGTCTATCTATCTTTAACCAGACACTGATACGGTTTGTTAACATATCTAGTCATGTCATGTTCTTTCTGCACACTGACCCTATATTGCATCAAATTAGTTGTTTGTAATTTGATTGATTTTAACATAAAAAGCAAAAGGGCTGTAGTTTTGGAAGTGGGTTGCACTTCGttagatatttttattttttcactgTGCAATCAAGGATCAATGTCCCCAAAACATGGTGGTCTAAATTGTTTTGTGAGATAAAGGCTTAATGGTTAATTTTGCAATTGTACATTGTCAAATGGAGGCATAATGACTTGACAACTTGACTTCTTCTTCTTTTGTTAAAATGTGTACCAAATATGGCGTCCGACATTGATTTATTGCCACATGAATATGACATATACAGTAGATTGGCGCAGGAAGAGAATACATTAGAATAACGTGATTAGTTTGGTTTGAAAATATGCAATTGTGTCTTGTAGAATATTGTTGAGGAGTTGTTTGATTTAGTCATATATGAGTAAACTATTTGTGCATGGGTTGGTTAGTTGATGAATGTCACATTTTTTTGCTTAATAGTTGAGTCTTTAAATTTGGCCGAGCCAACACCCCACCAACACTGGACCTCATACTAACTAACTTGCACCGTTGTGAAAGCAGTCCAATGCTCAGAGCCCCTCTCTGCAATTACACCTTGTTATGTGTGTTGAATACATTCAGATAGAGTAAATGGTTGGCTAAATGTTTAGATGAGTATCTGTGAGGACtgttagaacattagaatgttcCAGTTTACTTtggggaagacagaggagagggtcTTAAATATGAAAGTCTAATTACTGTATTTTGTCGTcaatatattattaatattattttgTGCCTAGTTAGCTAAGCATgaagatttatttttatttttggaataataaatgtaattttttctcaattaaagttgaataaatagaatgaaatgtattatatttataaaaGCGTACATTTTGGATAACATGTTGACAGGTGTAGGAGATGCATTTTCACTGGTTATGGTAACATTTTCATTGCAGCAATGCTAAGAGTATGGTATGAGGAGTTGAAGGATGTGTTAGTTGGATTTCAGGGCAGTAACATTGCGATGTTTTACAGAGGTTTGGTCATAGACACAGAGAGTATGTGAGATGGGAAGAAGAAAGCATCAGAAGAGAAATGGCTCCAGATGTGTTTATTACTACTTCTCTGAATGTAAAGTCATAAAGAACATTTAGAGCACATCGTTAAAGAGAACAGGCAACGTTCAAAGTTGAAAGTACCACGATGAATGATCAAtaatgtatttttcttgtctaaaCTGTATTTGCACACAGCTATGTATAAGGCTATTTTCTACTAATTGTACCTGATGctccatacattttttttgccCAAAATGACAAGCTGTTGTTACTTTTTAAAGGCAAAGTAAGTATTTTTTAGGTGTGATTGTATTTTTCAAAAATGTGTTTTGGAAAACTAGTTTGTaaacttttggagaaatgtaattTACCATTTGATAGATATTTTTAATTCGTGATTTTAATATCAATTCAATATTTATGAACTTTTGCCAGGCTTACAAAGAATATCACTGAATACAAAATAAACAACAAGAAGCTATATTGGACAACGAGTTTTGATATTTATGATCTCTGACTACAATGATTTTAATGGATTTTGGGGCAGTTGTTCCCCCCCATTAACAATTAAAATAACGTTTACAATACCATTTTTTTTGTGTCTGTCCAATTTTGTGTTGGGGCAGCTTTCTTTTGTCCATCATCAGAAGTTGGATCAGTGAAGGCAAGGAGGCTATCTGAAAAGAGACATCATTTGACCATAGATATACAGGTGTTAGTGTTCAATCAGCAACGATGTACAACTCAGTTTCATGTTAACGTTGTATGTTTTATAATTGTAGTCTAAATTGTTTTGACATAAAGGCTTACATTTTGCAACTGTACATTGTCAAATGGAGGCATGACTTGCCAACTTGATTTTTTCTTTTGTTCAAATTTGTAGCAAATATGGCATCCGACATTGATTTATTGCCACGTGAATATAACATATACAGTAGATTGGCGCATGAAGATAATACATTAGAATAACGTGATTAGTTTGGTTTGATTTTAATTTGAAAATATGCAATTGTGTCTTGTAGAATATGCAAATGTGTCTTGTAGAAAATCGCTGAGGAGCTATTTGATTTAGTCATATAGGAGTAAACTATTTGTGCATGGGTTGGTTGATGAATGTCACATTTGTTGCTTAATATTTGAGTCTTTAATTTGGCTGAGCCAACACCAACAACACTGGACCTCATACTAACTAACTTGCACCGTTGTGAAAGCAGTCCAATGCTCAAAGCCCCTCTCTGCAATTACACCTTGTTATGTGTGTTGAATACATTCAGATAGGGTAAATGGTTGGCTAAATGTTGAGATGAGTATCTGTGAGGACtgttagaacattagaatgttcCAGTTTACTTtggggaagacagaggagagggtcTTAAATATGAAAGTCTAATTACTGTATTTTGTCgtcaatatattattataactttGTGCCTAGTTAGCTAAGCatgaatatttatttttatttttgaataATAAATATATGTTCTGTTTTCTCAGCTAAAGTTGAATAAATAGAATGAAATGTTTCATATTTATAAACGCGTACATTTTGGTTAACTGTTGGCAGGTGTAGGAGATGCATTTTCACTGGTTATGGTAACATTTTCATTGCAGCAATGCTAAGAGTATGGTATGAGGAGTTGAAGGATGTGTTAGTTGGATTTCAGGGCAGTAACATTGCGATGTTTTACAGAGGGTTGGTCATAGACTGCCACAGAGAGTATGTGAGATGGGAAGAAGAAAGCATCAGAAGGGAAAATGGCTCCAGATGTGTTTATTATTACTTCTCGGAATGTAAAGTCATAAAGAACATTTAGAGCACATCGTTAAAGAGAACAGGCAACGTTTAAAGTTGAAAGTACCACGATGAATGATCAAtaatgtatttttcttgtctaaaCTGTATTTGCACACAGCTATGTATAAGGCTATTTTCTACTAATTGTAACTGATGCTccataaaaaatgttttgcccaAAATTACGAGCTGTTGTTACTTTTTAAAGGCAAAGTAAGAATTTTTAGGTGTGATTGTATTTTTCAAAAATGTGTTTTGGAAAACTAGTTTGTAAACTTTTGGAAAATGTAACTTACCATTTGATAGATATTTTTAATTCGTGATTTTAAAATCAATTCAATATTTATGAACTTTTGCCAGGCTTACAAAGAACatcactgaatacaaaaacagcATGAAGCTATATTGGACAACAAGTTTTGATATTTATGATCTTCTGACTACAATGATTTTAATGGATTTTGGGGCGGTTGTTCCCCCCCATTAAGAATTAAAAGAAAGTTTACATCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU835949 lncRNA downstream 124463 65483683 ~ 65484315 (-) True shhb
TU835944 lncRNA downstream 133484 65474989 ~ 65475294 (-) True G736190
TU835942 lncRNA downstream 135813 65472493 ~ 65472965 (-) True G736188
TU835881 lncRNA downstream 222244 65383228 ~ 65386534 (-) True G736134
TU835791 lncRNA downstream 357589 65250850 ~ 65251189 (-) True G736049
TU836069 lncRNA upstream 5368 65643355 ~ 65644138 (-) True G736296
TU836071 lncRNA upstream 9097 65647084 ~ 65647297 (-) True G736298
TU836086 lncRNA upstream 30300 65668287 ~ 65670335 (-) False G736312
TU836088 lncRNA upstream 30300 65668287 ~ 65670379 (-) True G736312
TU836107 lncRNA upstream 54061 65692048 ~ 65692686 (-) True LOC110529129
XM_036985990.1 mRNA downstream 62146 65520250 ~ 65546632 (-) True LOC110530358
XM_021613343.2 mRNA downstream 122302 65483660 ~ 65486476 (-) False shhb
XM_021613341.2 mRNA downstream 161428 65425967 ~ 65447350 (-) True cnpy1
XM_021613340.2 mRNA downstream 161432 65425967 ~ 65447346 (-) False cnpy1
XM_021613342.2 mRNA downstream 161432 65425967 ~ 65447346 (-) False cnpy1
XM_021611268.2 mRNA upstream 53499 65691486 ~ 65692775 (-) False LOC110529129
XM_021613363.2 mRNA upstream 100274 65738261 ~ 65850047 (-) False LOC110530368
XM_021613358.2 mRNA upstream 100274 65738261 ~ 65882376 (-) False LOC110530368
XM_021613360.2 mRNA upstream 100274 65738261 ~ 65882376 (-) False LOC110530368
XM_021613361.2 mRNA upstream 100274 65738261 ~ 65882376 (-) False LOC110530368
TU835971 other downstream 80195 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 568537 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3423598 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3560659 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7744901 57862738 ~ 57863877 (-) True LOC110530228
TU836724 other upstream 463109 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 555667 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 921209 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 1075706 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1743233 67381220 ~ 67381977 (-) True G738472

Expression Profile