RNA id: TU836133


Basic Information

Item Value
RNA id TU836133
length 2773
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110530368
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65738261 ~ 65882379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGAAATCTCAAGTGGAACCTCAACATTGTTCCGAGGAGCCTACGTCTCTCCCAGTGATGACATCAAACACAACCAGGTCTCTGCTCAGGGGCCCAACCCAGGCCAGGAGCCCTACCCTCCGTTTCAGAACCCTCCTGGTGTACAGTTTGAGGAGGCGTTCTACGAGGACCAGGTGCACCAGCGCCCTCCTCAGGCCACAGACCTAAACATGCACCTGGGCCTCAAGTCCACGGGCAACTATGTGGACTTCTACTCAGCATCCCGCCCCTACAGTGAACTCAACTATGAGACCAGTCACTACCCAGCCTCCCCGGACTCCTGGGTCTAGTGGACTATAGAGGAAGGACTGGTTGTCAGCAGTGTGCTGTGATGGGGGAGAGGAGCCGAGAGAGAGACTAAGACAGACAGGCCATGCATGTGCATGCATACTACAAGACATTTCTTCAGCGAGTTTAGTTTATCCTAGAGAGAGAGGTCCCATGCCCATGTGTCtttgaagaaagagagagagagagagagagtcacagagcAGAAGGAATAGAATTAGAGTccgaaagagagaaggaaggagggaaagagagacaggaagaacGAAAGAGCAGGATATTGTTAGAAAACAACTCACAAAAGGCGAAAGGAAGGTATTAAATGATGGGGTCACCACCAAAAGCTTGGAGCGTTGGAGTGTAAGGAGCGGAATATCTTGGAGATGATCAGCAGTATTCTAGAAGGAAGACAACTGTAAATATGTGGTATAGTAAAGAGATTAGTATGTGAAGCACAAGAAAATGAAGTGTCATTTACACAAGCTAGAGAATAGTTGTCAGTCACAAACTCTTATTAGGTTTTAACGTACGGCTTCAACCTGTGTTGTGTGTAAGGAGTATAATCTCTGGGCAAAATAATTGCTTCTAGACTTTGTATCTTTTGATTTGTTATAATtctttttttatttctacttttttAATCCTTAATTCTGATGTAAAATATTTGATGTACATTACGGAGATACATGTGCATTGTGTATATTACACAATTGCCTGTGTCCCTTTCCTTATTGTCTCAGCATAATGTTAGTCTGTCTGTTACATTCTGGGGGATAATAGAGAGTACAATGTCTGCACACAAACAAACCACTACAAGCAATGAAACATGTTTTCGCAGCGAAATGAAGGACGGATTTCAAAGTTATTGCTAATCTGATTATGTGAATTGGTGGACCTAAATGAGTTAAGCGGCTCAACAGCATCATTCCACTTCCTTGGTGCTCTTCCACTGCCTAAAACAGTTTACGGATGGACGGTGGATATACTCAAAATACGTTTTATTTCCTAAAACGCTGTGTTacatgaaaacattttttttcctcCACAAGCCTCCTAGTGAATTGTGCTCATTGTCCGTTTTTTAAAATGTGCCAAACATGGTTATATCCAAGCTGAGGGGTAACGTTGAACTTCTGTTGAAGTTTACATTCAACAGCAAGTTGTTGGTTCTAATGATGCCAGTTTGTAAATGCTTTTTTTTATGTGTTTCAATGGAATAAAGCTATATATACACTGTAACAAGACTGGAACATTACCAGGGGGGCGGAAATAATATCTTTGAGAGCTTAATTCCCTCCAAATATGTACAAATTAGTTGAATCTGTGTTGAAAGATAATCAATGTTTAAGAAAGtccgtttttttttcttcttcagaaaTGGGTGGGAATTAAGTTAATGGTAGACTAAACTGTTAATAGAGTatgaatatatattatatataaatatatactttttATGTGGGGACGTGGATGTCACTTAAAGCAGCAACATTATGGAAAAGACTTCATAATAATACATGTAGGGTTTTGTTCACCTTCATTTTCTGGTCTGCACACTAAAATGTTGACTTTCTAGTCATGTTGTTGCTATGAGAAATAGGGGAGACCAGGGGCTGAATATCCACAATTTACGGAAGTTGTCACAGACCTCGTAACTACAAGACAAGGTGCTAAAAGTTACACCTACAGAACTTTGTATTTTGGTGTTTATAGAATgtattttgccacttcatgtccctAGCTTTGAGTATTGAAATTGTCACAGGTGAATGTCTTTCATCACGACTAAGGAAATTATCCCCTTTATCCTTGTTGGATTTCCTTAAACTTGTCAATGTGGTGAACGGTTATCAACAATGGAGCTGATgatccagtctgtgtgtgtgtttatctgtgaaAGAACAAAAGTGGTCGTTTTCTACAAACCCTGTAGCACCCTTTCCCCAGCATGACACACGGTTTCATAGTGAGTCCTCCTTTTGATCAAATGTTACAATAACGTTATGTGGCAACATAGAGAAAAATATATGACATTGCCCACTAATGCATGATCAAATCTTATTTAAGTCGATGTGAATTAAAATAGTGGTAGACTACACACTAAAACTGAATGCAGGAGAGAAGAAATGTATGTTAAAAGTTGACAACGAGCTCTGGTCTCCCCTACATATCGTTCTAGAAGTTTCTGGGTTATCTTCAGATGCTTGAACAATGAATAAATGATGCAAACACCCAAATTGTTCAACATGTCCTAAAACGATCCCCCTTCTCATTAGTTAGCATCTGAAAACAGACACAGTCCTTGTGAAAAGTAGGCATACCTGACAAACTGTATTGAACTATGTCAGTAACCTTTTTGTTGCTAGACAATGTGTTTTATAGAAGTGAAACTTTTTATTGCCTCAACAGATTGAAACTGCTACAAAAATATAAACTGACCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836154 lncRNA downstream 18280 65718415 ~ 65719985 (-) True G736350
TU836115 lncRNA downstream 31775 65703306 ~ 65706490 (-) True G736336
TU836107 lncRNA downstream 45579 65692048 ~ 65692686 (-) True LOC110529129
TU836088 lncRNA downstream 67886 65668287 ~ 65670379 (-) True G736312
TU836086 lncRNA downstream 67930 65668287 ~ 65670335 (-) False G736312
TU836262 lncRNA upstream 129401 65870544 ~ 65876229 (-) True G736452
TU836286 lncRNA upstream 152676 65893819 ~ 65894323 (-) True LOC110529131
TU836295 lncRNA upstream 154838 65895981 ~ 65896341 (-) True G736469
TU836297 lncRNA upstream 156301 65897444 ~ 65898116 (-) True G736471
TU836312 lncRNA upstream 167109 65908252 ~ 65909053 (-) True G736481
XM_021611268.2 mRNA downstream 45490 65691486 ~ 65692775 (-) False LOC110529129
XM_021613349.2 mRNA downstream 100278 65608778 ~ 65637987 (-) False LOC110530362
XR_002474514.2 mRNA downstream 100278 65608780 ~ 65637987 (-) False LOC110530362
XM_036985990.1 mRNA downstream 191633 65520250 ~ 65546632 (-) True LOC110530358
XM_021613343.2 mRNA downstream 251789 65483660 ~ 65486476 (-) False shhb
XM_021611271.2 mRNA upstream 152826 65893969 ~ 65895050 (-) False LOC110529131
XM_036986000.1 mRNA upstream 335671 66076814 ~ 66096951 (-) False LOC110530374
XM_036986001.1 mRNA upstream 335671 66076814 ~ 66096951 (-) False LOC110530374
XM_036986002.1 mRNA upstream 335671 66076814 ~ 66096951 (-) False LOC110530374
XM_036986003.1 mRNA upstream 335671 66076814 ~ 66096951 (-) False LOC110530374
TU835971 other downstream 209682 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 698024 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3553085 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3690146 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7874388 57862738 ~ 57863877 (-) True LOC110530228
TU836724 other upstream 359953 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 452511 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 818053 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 972550 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1640077 67381220 ~ 67381977 (-) True G738472

Expression Profile