RNA id: XM_021611271.2


Basic Information

Item Value
RNA id XM_021611271.2
length 1082
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110529131
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65893819 ~ 65895050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGAGACCCAAGACGAGAGAATGGGGAATGAGAGCAATACATCTTGCGACAACATAGATGACAATGTCATACCTAAATCATACAGATATGCATTGCTGTCAATATACACTATAGTGCTTATTGGAGGGATCATCAGCATGTCCCTCATGATCAACAACATCAAGTTCAACGCCTGCTCGGTGACCACCACAGCCGTCTTGAACCTGATCATGGTCCACATCCTCTTTCTCCTGACCGTGCCCTTCCGCCTCTACTTCTACGCGGCCGGCGAGTGGCATCTCGGGCCTAACTTCTGCAAGGTGGTCAGTGCCATGATCCTCGCCCACATGTACCTAGCCTTTATCTTCTACGTGATAATTCTGGTGATCCGCTATCACGACTTCTTCAGGAGTTCTAAGCAGGTGTTCTACAGGAGGCTACATGCCCTAGGGGCCAGTGCTGCTGTCTGGGGCCTCATGCTAATTGTGGTGGTCCCTTTAACTGCTGTGAAATATGGATCATCTACAGACAGTAACACAACCACCAGTGAAAATCAGTGCTTTAACTTTGGAGGAGTTTTTGATGAGAAACATGCTGTAGCTGTGCTGAACTACATCCTCAGTGCTCTCATCATCATACTTACATTAGCCCTGGGCTGTTGTCAGATGTGTATTCTGTGGAGTGTGTACAGAACTCACAGGGCGATGATCTTCTCGCAACAGGAGTTTTGGGCTCAGATCAAAAGTATTTTCTTTATGCTGGCCATTATAGTATGCTTTGTTCCATACAATGCATTCAGGATTTACTATGTGAGTCATTTTAATGCCAATCTCCAGGTAAAGAATGAGATTGCTCTCGCCGTCACAACATTCAGCTGCTTTGACATGCTGACTTTTATAGGGAGAGTGTCGTTCAGACCCTGTGATACAATATGCTGTGTACCTTGATTATCAATACTGATTATTGAGTCAGATATTATTCTATTTGCACCTTATTTGCACCATGTTAACCAAATGTACAAAACtacagtgcacaaaacattaggaacacctgctctttccatgacatagactgaccaggtgaatccaggtgaaagctatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836262 lncRNA downstream 17740 65870544 ~ 65876229 (-) True G736452
TU836133 lncRNA downstream 152826 65738265 ~ 65741143 (-) True LOC110530368
TU836154 lncRNA downstream 173984 65718415 ~ 65719985 (-) True G736350
TU836115 lncRNA downstream 187479 65703306 ~ 65706490 (-) True G736336
TU836107 lncRNA downstream 201283 65692048 ~ 65692686 (-) True LOC110529129
TU836295 lncRNA upstream 931 65895981 ~ 65896341 (-) True G736469
TU836297 lncRNA upstream 2394 65897444 ~ 65898116 (-) True G736471
TU836312 lncRNA upstream 13202 65908252 ~ 65909053 (-) True G736481
TU836313 lncRNA upstream 14066 65909116 ~ 65909591 (-) True G736482
TU836314 lncRNA upstream 14633 65909683 ~ 65910893 (-) True G736483
XM_021613359.2 mRNA downstream 11590 65738261 ~ 65882379 (-) False LOC110530368
XM_021613357.2 mRNA downstream 11592 65738261 ~ 65882377 (-) False LOC110530368
XM_021613364.2 mRNA downstream 11592 65738261 ~ 65882377 (-) False LOC110530368
XM_036985995.1 mRNA downstream 11592 65738261 ~ 65882377 (-) False LOC110530368
XM_021613358.2 mRNA downstream 11593 65738261 ~ 65882376 (-) False LOC110530368
XM_036986000.1 mRNA upstream 181764 66076814 ~ 66096951 (-) False LOC110530374
XM_036986001.1 mRNA upstream 181764 66076814 ~ 66096951 (-) False LOC110530374
XM_036986002.1 mRNA upstream 181764 66076814 ~ 66096951 (-) False LOC110530374
XM_036986003.1 mRNA upstream 181764 66076814 ~ 66096951 (-) False LOC110530374
XM_036986004.1 mRNA upstream 181764 66076814 ~ 66096951 (-) True LOC110530374
TU835971 other downstream 365386 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 853728 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3708789 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3845850 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 8030092 57862738 ~ 57863877 (-) True LOC110530228
TU836724 other upstream 206046 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 298604 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 664146 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 818643 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1486170 67381220 ~ 67381977 (-) True G738472

Expression Profile