RNA id: XM_021613383.2


Basic Information

Item Value
RNA id XM_021613383.2
length 1713
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110530385
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66192359 ~ 66210028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCGTGTGACGTGTACATAGAACGTGAAGTCTCATCACGTGATATGGACGTCTCGCCTCTTATGTGGTTGTACTTTTTGTTATAAAAACAAATTACGACATTAGTCCACTCCCCAGGATATTCTTGTCACTGGTACTGTGAGTTTTCTACTCTAAGCAACAATCATGAGGGTCTCCACAAGCAAACTCCAGCAGATGGCCATCTACACCACCTTGTTGACTGGTGCTGGATGCGGCACAATGTATTACCTTCTGCAAAAGAACTTCTCACGGTCGGACTACCACCGTCTAGCCCTGGAGCAGCTGAAAGCCAACCAGACAGCCATGGACAGTCTgggagcaccacccctgaagGTCCACAACATCCACCTGTCTGACCGACACAACCGGGTGGAACCTTACACGGCTGAGATCAAAATCCCAGTGACAGGATCTAAAGATGGTGGCTACCTCTACACATCCTCAGTAAGAGACCCCCAAACACTTGGGTGGAATTTAACGCAGGCAGTGCTGCAGCTTAGAGAGGGTCAGCGTATTGACCTTCTCACATTCACACCACCGCCAAATAAGACAGAAGGACTTGAGACAGGCAACTGGTCCTCCTGATCTGCTCACCAGTCACCAAAACTACAGTGTGATGAAGGTAGAACTGCTACAATTGTCCCCATGTCATCAGGCATGGTGTCGCCATAGCTTTATGAATTGAAGTGTCATAGTCATATTTGAAAAAAGCACCAGAGTGCAGTGCTGGACACTTATTTAGACAAAAGGGCATACACAAGCTGCCTCTTGGTTTGGAATAACCACAGTCATGTTGATGATTTGACCAATGTTTATCAATGCTACTGTGTACATAACATTTACATTCAGGGAAAATGAAAAAAGTGCTACGTCCATAAAATGTCATGCATATTCATTTTGCTCAGCGCTGTCCTGAGCAAAATGTTCATCCTACTGGTGAGAATGAAAGGACAATAACAGAGCAGCAATTGTGTCATATGCAgtggtaaaaaacaacaacatattcctagtataatacaatgcaTCTGATGAACATTTCTCCAGATTAACAATGTAAATTggcagtgttggggaagctactctgaaaagaGATTACCAGCCACCAATTACGTTAAGTAAACTATATTACTCAATCTGCAATGACATAGAATATAAATAGCAAGAACAGATAACTCTGTAATAAGATGTTAAGAGAACGTGTAATTTATCCTATTAAACACAAAAATGTTGTTTCAGGTGAGAATTAGCCAGGTCTGAAAATTAAGGAAATTCTTGCCTACCTcacccatattttatttttacaaaaaaaagtaGTGTTTCATTCCATTAGTTACCTACACCACTAGATGGCAATAAAGTCATTAACTATTGAAAACACTACAAATATTTGAATTTAGTTGCACTACCACAATGTGCAAAATGTAGTTTAATTACTAACTGAACCACATTAAGTTCAGTACACCCCAACACTGGTAATTGCTTAGTCCAAAGCCATATCTTAATATCCAGCACTTGAGAAACATTTAGGCAATGGTTCCagttgtactgtacagtatctgAACAACCAAAAATGTTGTCTCCCAAGGAGGTATTGTTCTATGTTTTCAGATTGATTTATTCGGATGTGACATTTTACAGTGAAAATGAGATCTGTAAAACGTGGAAAATAAACGTGGAAATAAACAGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836774 lncRNA downstream 4508 66198228 ~ 66199927 (-) True G736888
TU836780 lncRNA downstream 35373 66168482 ~ 66169062 (-) True G736893
TU836741 lncRNA downstream 83959 66119950 ~ 66120476 (-) True G736858
TU836739 lncRNA downstream 86461 66117772 ~ 66117974 (-) True G736856
TU836723 lncRNA downstream 104505 66099728 ~ 66099930 (-) True G736840
TU836805 lncRNA upstream 9379 66219407 ~ 66219822 (-) True G736918
TU836842 lncRNA upstream 51253 66261281 ~ 66261602 (-) True G736950
TU836843 lncRNA upstream 52425 66262453 ~ 66262663 (-) True G736951
TU836847 lncRNA upstream 57140 66267168 ~ 66267430 (-) True G736955
TU836831 lncRNA upstream 59797 66269825 ~ 66270278 (-) True G736944
XM_036986000.1 mRNA downstream 107484 66076814 ~ 66096951 (-) False LOC110530374
XM_021613388.2 mRNA upstream 63760 66273788 ~ 66332260 (-) False LOC110530388
XM_036986007.1 mRNA upstream 63760 66273788 ~ 66332261 (-) True LOC110530388
XM_021613393.2 mRNA upstream 128242 66338270 ~ 66365785 (-) False LOC110530389
XM_021613390.2 mRNA upstream 128242 66338270 ~ 66365787 (-) False LOC110530389
XM_021613392.2 mRNA upstream 128242 66338270 ~ 66365787 (-) False LOC110530389
TU836724 other downstream 102808 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 675852 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1164194 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 4019255 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 4156316 62045035 ~ 62048119 (-) False G731764
TU837419 other upstream 349168 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 503665 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1171192 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 1210711 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 1213835 67423863 ~ 67425339 (-) False G738504

Expression Profile