RNA id: XM_036986007.1


Basic Information

Item Value
RNA id XM_036986007.1
length 2486
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110530388
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66273788 ~ 66332261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCATGTGGGCGGGGTATTTTCGCGTTGTTGGCAATCAGACCATTTTTTTTCCTCCAAGCAAAGAATACAGAAGTTGGTGAGAAATTGCCCAGAGTAATTTGTTATGACAATGGATACAATACGctattatttcatatttttggtCACGTTTCTTGGAGCAGGAATTCACATATCAATCGGATGTATTGACCGAaacaaaccgatttgaagacaccaaTCAATGACCTCATTGCGCACCAATGcGTTGCAGTGCGACTGCCAGTGGTGTAGTAACAGTACCTGCTACACGGATGGCCTGTGCTTTGTGTCCTTCGTCAAGTCGGGCAGTAAGATGGTGGCACAGGGGAGCAGGTGTTTACTGGAAGCAGACCTCATCCCTAAAGACAGGCCGTTCTTCTGCGCCCCTTCCAAGAAGGAGAACACCGGTGTTGTCCCTGTCTGCTGCAACAGAGACATGTGTAACAAAGACCTCAACCCAGAAGACTACTCAGAGACATTCCCCACAGCCCGTACCCCTCCAATGAGCCCAGTGACCCTGGCGGCCGTCATTGCGGGGCCGGTGTGTATGCTGTGTTTCGTGCTGCTGCTGGTGTTCTATGTGTGCCACAGCCGCTCGATTATCCACCACCGCGTGCCTAACGAGGAAGACCCTGCCATGGACCACCCCTTCCTGGCCGACGGCCATACCCTCAAAAACCTCATCTACGACATGACCACCTCAGGCTCCGGATCAGgtCTGCCCCTATTGGTGCAGAGGACCATAGCCAGGACCATCATCCTGCAGGAGAGCATCGGAAAGGGAAGGTTCGGGGAGGTGTGGCGGGGCCGCTGGCGAGGAGAGGAGGTGGCCGTTAAGATCTTCTCATCCCGGGAGGAGCGCTCGTGGTTCCGTGAGGCCGAGATCTACCAGACAGTCATGCTTCGCCACGAAAACATCCTGGGCTTCATTGCCGCTGACAACAAAGaTAACGGCACGTGGACCCAATTGTGGCTGGTATCAGATTACCATGAGCACGGCTCCCTTTTTGACTACCTGAACAGGTACACGGTGACAGTGGAGGGCATGATCAAGCTGTCCCTGTCCACCTCCAGCGGCCTGGCTCACCTGCACATGGAGATTGTTGGCACGCAAGGTAAACCTGCCATCGCCCACCGCGACCTGAAGTCTAAGAACATCCTGGTGAAGAAGAATGGTACTTGCTGCATCGCTGACCTGGGTTTGGCTGTCCGGCATGACTCTGCCACTGACACCATCGACATCGCCCCCAATCACAGAGTTGGAACCAAGAGGTACATGGCCCCTGAAGTCCTGGATGACTCCATAAACATGAAGCATTTTGAGTCATTCAAGCGGGCAGATATCTACGCCATGGGCCTGGTGTTTTGGGAGATCGCACGGAGATGCTCAATAGGAGGTATCCACGAGGACTACCAGCTGCCCTACTATGACCTGGTCCAGCCAGACCCCTCggtggaggagatgaggagggtggTGTGTGACCAGAAACTACGGGCCAACATCCCCAACAGGTGGCAGAGCTGCGAGGTGCTGCGAGTGATGGCTAAGATCATGAGGGAGTGCTGGTACTCCAACGGGGCGGCCCGCCTCACCGCGCTGCGCATCAAGAAGTCCCTGTCCCAGCTCAGCCAGCAAGAGGGCATCAAGATGTAGACTAGAGGGTCAAgactacctgtctgtctggactTTCTTTCTGTCCCCATCGCTATGTGCTGTTCTCTTCGACATCTCTTTCTctgaagaggaagggaggggatagtacaattcaggtgtgtgtgtgtacctttcaATGTCTCATTCCTTCAAGGCTGATTGGAGAGattgcttctctgctcttctctgttctcctctgatATTGCATCAGGACATGGGTGGATTCTGAATAACATTCTAGACTCTGGATGCAGAGACACAACCTCCTGTCCCTCCCGTTGTTTTGCCTGACTGTATCCATCCCTTCTTTCTTACCCCATGCAAGAAATGCTGGACTTTATTGGGACCTCCTGTAGGAATTCCATTGCAAATATTCTGAATCAAAGAAAATATGCATTGAAAGAAATTCTAAATTTTGATATACCTCTCTCTGGTCATTTCTCAAAGTACCAAGGTCAGTGTCTATTTAAGTGTTTTGTTTAAACATGATTAAGTGTTACTTATATGAATTTCTTTATTTCACTTAATATCTTTCACCttcaaatgtttattttacaGATGCCAGATCCATATTTTTTTATGTGTTTTGTCAAGCAAAACAGAACATGACCTCATTAAGCTTTGTCAAAATGCAGTGAAATATGCAATATCTTGTTCATTGCTATGTATATATATGTTCCTTaaagtgtatacagtgcattcagacagtattcaaaccccttgacttattccacatttgttacgttacagccgtattctaaaattgattaaattattttttccccactgatcaatctacacacagtaccca

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04674 TGFBR1, ALK5; TGF-beta receptor type-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836831 lncRNA downstream 3510 66269825 ~ 66270278 (-) True G736944
TU836847 lncRNA downstream 6358 66267168 ~ 66267430 (-) True G736955
TU836843 lncRNA downstream 11125 66262453 ~ 66262663 (-) True G736951
TU836842 lncRNA downstream 12186 66261281 ~ 66261602 (-) True G736950
TU836805 lncRNA downstream 53966 66219407 ~ 66219822 (-) True G736918
TU837355 lncRNA upstream 171221 66503482 ~ 66503709 (-) True G737404
TU837356 lncRNA upstream 172001 66504262 ~ 66504487 (-) True G737405
TU837357 lncRNA upstream 172803 66505064 ~ 66505338 (-) True G737406
TU837358 lncRNA upstream 174614 66506875 ~ 66507076 (-) True G737407
TU837394 lncRNA upstream 186234 66518495 ~ 66596241 (-) False G737426
XM_021613384.2 mRNA downstream 63760 66192359 ~ 66210028 (-) False LOC110530385
XM_021613383.2 mRNA downstream 63760 66204435 ~ 66210028 (-) False LOC110530385
XM_036986002.1 mRNA downstream 176837 66076814 ~ 66096951 (-) False LOC110530374
XM_021613393.2 mRNA upstream 6009 66338270 ~ 66365785 (-) False LOC110530389
XM_021613390.2 mRNA upstream 6009 66338270 ~ 66365787 (-) False LOC110530389
XM_021613392.2 mRNA upstream 6009 66338270 ~ 66365787 (-) False LOC110530389
XM_021613389.2 mRNA upstream 6009 66338270 ~ 66365788 (-) False LOC110530389
XM_021613391.2 mRNA upstream 6009 66338270 ~ 66365788 (-) False LOC110530389
TU836773 other downstream 63797 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 172161 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 745205 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1233547 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 4088608 62180687 ~ 62185180 (-) True LOC110530961
TU837419 other upstream 226935 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 381432 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1048959 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 1088478 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 1091602 67423863 ~ 67425339 (-) False G738504

Expression Profile