RNA id: XM_021613394.2


Basic Information

Item Value
RNA id XM_021613394.2
length 5885
RNA type mRNA
GC content 0.51
exon number 44
gene id LOC110530389
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66338270 ~ 66381730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagaaagagagagcgcgcgcgcggGAGAGAGCTTGAGAGTGCACTCAGCCGCAGGAGATGCAAAGGTCCGCAGGAGACAGAGCGCGTGAGAGAGCAGATTCCAACTCTAAGCACGTTAAGGACCATTTTGAATGATTGGATTTTGCAAATCGAGCCCAAAATGATTATTCGCATGTCCAGGTGGTCTCTGGTTATTCATCTCGTCCTGCTGTATCACTTTTCTACTGCGGTTGAGGTCATTGAAGACCGTGGCTCTACGGGACACCTAGACCTGACCGAGTTGATCGGAGTGccactccctccatctgtctccttcaTCACCGGCTATGAGGGCTTCCCGGCCTACGGCTTCGGGCCTGACGCCAACATCGGACGTCTCACCAAGACCTTCATGCCCGATCCTTTCTTCAGGGACTTTGCCATCATTGTCACCATCAGGCCCAGCAGCAAACAGGGAGGGGTGCTGTTCGCCATCACTGATGCCCAGCAGAAGGTGGTGCAGCTGGGGTTGGCACTGACGCCCGTGGAGGACGAGACCCAGAGGATTCAGCTGTACTACACCGAGGGGGGCGAGGAGTCCTCACACAGCCAACAGGTGGCGTCCTTCAAGTTGCCTGATATGAGGAATAAGTGGACGCGCTTCACTCTGTCGGTGCAGGACCAGGAGGTACGCCTCTATATGGACTGTGATGACTTCCAAGCAGAGACCTTCCACAGGAGCAGCCGCCAGCTCAGCTTTGAACCCAGCTCAGGCATCTTTGTGGGCAATGCTGGAGGAACTGGCCTGGAGAAGTTTGTGGGCTCTATCCAGCAGCTGGTGATCAAGCCGGACcccagggctgcagtggagcagtgTGAAGAGGATGATCCCTATGCTTCTGGGGATGGGAGTGGGGATGACACGTTGCATGACCGTGAAACAGATGACAAGTTGATGAACATGGAACGAAAAAAGGAAACAGCACAGCCAGAGGACATGCTAAGCGTGCCAGTGCGAGCTCCACCCACAGAGTCTCCAGAGTTGGAGCTAGATGAGTACACTGTTCACCTGACCCCCACAAACAAAGCACATCAGGAGATGCTGCTCGAAGGTGGGGAAGGACCCCACCAAACAGAGGAGCCAGGGGAGAGGTCAGGGGATGGCAGGCCTCTTAGCTACGGACAGAAAGGAGAGCGAGGAGAGCCTGGGCCTATGGGTCCTGCTGGCCCCCGTGGCCCCCCTGGCCCTTCCAATCCCTCTGAGGATAGGTCTGGACACGGCCACCTAGGACCAAGGGGCCCTCAGGGGCCTTCAGGGGCCCCTGGGGTGCCAGGGAAGGACGGACAGCCTGGAAGCAAGGGTGAAGATGGAGACCCAGGACAAAGAGGACCTTATGGATTCCCAGGGTTGGCAGGAGAGGTTGGAGTCAAAGGAGATAAGGGGGACACAGGAGTAGGCTTACCGGGGCCTCCAGGCCCTCCCGGACCACTCAAATCTCACAGTGTACCGTATGGAGAAGATGCACTCGGCTCTGGCTTTGGGGACCTTGACGATACAGAATTTATCAGAGGTTCCCCTGGTCCTCCCGGCCCTCCAGGTCAACCTGGCCCGCCTGGTCCCACCCGTTTCTTCGAAGCCTCCGAGGGCTCATTCCCTGGACAACCAGGTTCTCCAGGGCCACCTGGCAGAGACGGCCTTGTTGGGAAACCTGGACCACCGGTGATTGAGGATTGGTTTAGTGGTTCTGGTTCGGGCTCTGCATTTGGCTCTGAGTTTGGCTCAGGGTTGTTCGGCTCTGGGCTTGGGTCTGGCGAGGGTCCTACTGGTCTGGATGGGGATGCTGGGTTGACAGGGCCTACAGGTCTGAAGGGTGAACAAGGACTAGCTGGACCAAACGGACCAATGGGTGTATCAGGTGACCCAGGGCTGACAGGAGCTACAGGACCAATGGGACCAGAGGGGAAGACGGGCGACCCTGGACCTCGGGGGCTGCCTGGCCCCCCCGGACCCCCAGGAGGAGGATTTTTTGTCGAGGATGTGGAGGGGTCTGGGAAGAATGACATGGTCCTTGGCACAGAACTCAAAGGCCCTCAGGGACCTCCTGGTCTCCCTGGCCCTGCAGGACCAAAGGGTGAAGATGGGAAGGATGGGGCTCCTGGGTTGTCAGTGAAGGGTGAGCCTGGTGCTTCTGGACCTGAGGGACTCCAAGGGCTAGCTGGGTTACCAGGCGCCAGGGGATTGAAAGGAGACAAAGGTGATCCAGGACCAAAGGGGGAGTGTGGTCCTGATGGACACAATGTACCTGGTCCTCCTGGTCCTCCCGGCCCTCCAGGACCAATTATCAATCTGCAGGAGCTCCTCCTGAACAATACAGAGGGCATGTTTAACATCACTGAGATACGTGGGCCCCCTGGCCCAATGGGCCCTGAAGGCGAGCCTGGCAGAGCAGGATTCCCTGGCCCAAGAGGACCAAAGGGTGACAGTGGGCTTCCTGGTTTTCAAGGTCCACCAGGAATGAAGGGTGCGAAAGGGGAAGCTGGTGTCACTATCGCTGCCGATGGAACTGTGTTGACAAGTGTCAGGGGGCCTCGGGGACCAAAAGGAATCAAGGGTGAGCGTGGCTTCCCTGGAGCTTATGGTGTCATGGGACCAATTGGACCAACTGGACAAAAGGGAGAATACGGGTTCCCTGGTCGACCGGGGCGACCTGGAATGGCAGGGAAGAAGGGAGACCAGGGAGATGCCATTGGTCAACCAGGACTTCCTGGTCCTCCTGGCCCTCCCGGACCCCCAGGACCAGTAACAGGGCTCAATGGAACAGTTTTTCCGGTCCGTCCCAGACCGTTCTGCAAAACACCAGTTAATGGCAGCAAAGGGTCGTCACAAGGTGGCAGGAGAAGAAACGGAGGTGCTAAAGGGGAAAAGGGAGATGTTGGACTTCCTGGAATGCCTGGAGAACCAGATGATATTCTACCAGAAGGCTTTGTAggagaaaaaggagaCATGGGCTATGAAGGAATGAAAGGAGACCAGGGTGAACCTGGGTTGCCTGGCCCTCCAGGTCTTCCTGGGAGATCAGGCCTTGTGGGGCCAAAAGGTGAGTCCGTCATTGGCACCGTTGGTCATCCTGGAGCTCCTGGTGAACCAGGGGTTCTTGGCATTGGACGACCAGGCTCTCGGGGGCCCCCTGGCCCTGCCGGACCCCCTGGACCACCCCCTGTCTATGGTTCAGCTGTGAGTATTCCCGGCCCACCTGGGCCTCCCGGTCCTCCTGGGATTACTGGCTATGAAAACCCGgtgtccacatacaggaACACCAACAGTTTGATAAGGGAGAGCCACCGTGCTGCAGAGGGCTCGATGGCATATGTCTCAGACAAGGGAGAACTCTACGTTAGAACTAGAGATGGCTGGCGCAAGGTTCAGCTTGGTGAGCTCATCCTCGTCCCAGCAGAGAGCCCATCCTCTGCAGTGTCCCAGGCCCTGAGCAGACCAGGAGATCGCACCATACCCCACAGGCCACACAGCCAGGAACTAGTTGGAACTAGCTACGTGCCCAACTATAATGTCCTACCTCATACAGTACACTCAGTACCAGCGCTGCACCTGGTGGCCCTGAATGCTCCGTTCTCTGGGGACATGCGTGGCATCCGGGGAGCAGACTTCCAGTGCTACCAGCAGGCCCGAGCCATGGGTCTCACTGCCACCTACAGAGCCTTCTTGTCCTCACACCTCCAGGACCTGGCCACCATCGTCAAGAAGGGAGACCGCTACAACATGCCCGTCATCAACCTCAAGGGAGAGGTGATCTATAGCAGCTGGATGAACATATTCTCTGGGAACGGAGGCGTGTTTGACCCATCCATCCCCATCTACTCCTTTGAAGGACGGAACGTCATGACGGACCCTACTTGGCCTCAGAAGCTGGTGTGGCATGGCTCCAGTACGGTGGGCATCCGTATGACCACTAACTACTGTGAGGCGTGGCGGGCGGGTGACATGGCGGTGACGGGCCAGGCTTCGCTCCTCCAGACAGGCAGACTTCTGGGCCAACACACCCGCAGCTGCTCCAACCATTTCATAGTGCTGTGTATCGAGAACAGCTACATTGACCACAGGAGGTCTAATTAACATCAACACACATACATCTAGTAtactctctcacaaacacacacacatacgtctcCTATTAACATAGAGCAGCTATGTGCTGGACAACATGAGGCGCTATCACACACCACAGCACTCACATCTCTACCACAAAAAGACAGAGCAGCTTCATACTGACCACAGATGAAACTCCCTCTGTTCATTCACCTCTCAATATTAAACTCTCATCAACACAGCATCACTACATTGCACTGGTCACTAATGTATGTTTACTGTTTCTTTAAGAAAGGTGTAAATATAATGTAAATTACTTCCTGTCAAAAGCACTGCATCACTCCAATTCATTGTGTTTCAATTTGACTGAAGGAATGCCAAAGAACTGGTGATCAGCAACCAACCGACTAACCCACATTGTTTCTGCAGGAGTAGCCTTTAACACGGTTTATTTTTGTTGGTTTGCTCATTCGAGTCTTATTCTTAAGTGCCTAGTAGAGTAGTTTGCATAGAGACAGCAACCATTCTAACCTTTTGTGGTTTACTGTATCAGACCCCAAAACAAACAATATGATGAAATTAGGACGACTGATTTTTCTGTTTTCCGTGAtaaaaaagaataatgaaatgccAGGATCTATTCAGACAAGGGAACCATGTGTTGCTCCCTCAAGCCTTGAAGTCATTTAGATGCACTGAGTTTATTTGAATAGTTTGGGGTTTCCATATCCATGAAGGCTTTTTGTCTGTGAAAATTAAGGGTTTTTCTGTTGCGAGCGACTTTGTCTTAGTATTTAAGTTGAATTCTAAGTTTCGTATTTTATTTATACTGTAACAGCACATAATCTTAAAATGTGGCAGCACATAGGTTCACTTTGAAAATTAAAttgaacaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatgttcaaTCTGCCTGCGCTATCACCATGAAATAGTTGTTTTTGTACGGTATTCCACTAATTGACTTACTGTAGATGTACTTTAAACAAATCTATGATTGAGAACTAGATATTTGAATAGCTGTTACAGTGATTCAGAGAAACTATGTACTCATTGACTGGTGCTCAgtgaataaatgttttttttaaaaagtcTTGGCTATTAATTTAATGTGGAGCTTAATTTAATTTGTGTCAATAAATGCATTTACACCAAATGTGCACTAGATGGTAGCACACCATCTCACTTTACCGATAGTGTTGTTGAAAGTGGGATTGGGACGTGAACCTCAAATAAAACACCTCAGCATAATTTGATATGAGCGCTGATACAGCTTTATAAATCTGGGTGGTGACATTTAAACATATTTCTGGTTTGTGGCTCAACGGGTTATCAAATCGGTCTTACTGGATGACTGACTAGGTGTTTCTTACATGTGCAATGATACAGTACCACCTCAGTGCAAATGGAAGACTTCTATGTTTCTGTTTTGAATTATTCATTGACCACAGTCATTTTATTATATAGACGTTCTTCTTGTGAACAGTGTTCTCTGAATGTGTCATTGTTTCCCTGAATCTAAAACTGCCACgcactgatctgtttcacctgtctttgattgtctccacccacctccaggtgtcacttgttTTTCCCATTAGTCCCTGGGTATTTATTCAGGTGTtccgtttgtctgttgccagtttgtcttgtctgtcaagtcaaccagcgtgtttttccgtgCTTCTGCTTTTTCTTATCTCTCTTTTACTAgttctcccggttttgacccttgcctgccttgactct

Function

GO: NA

KEGG:

id description
K08135 COL15A; collagen type XV alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836867 lncRNA downstream 32181 66305819 ~ 66306089 (-) True G736973
TU836862 lncRNA downstream 38149 66294377 ~ 66300121 (-) True G736968
TU836855 lncRNA downstream 52072 66285763 ~ 66286198 (-) True G736963
TU836850 lncRNA downstream 61514 66276452 ~ 66276756 (-) True G736958
TU836831 lncRNA downstream 67992 66269825 ~ 66270278 (-) True G736944
TU837355 lncRNA upstream 121752 66503482 ~ 66503709 (-) True G737404
TU837356 lncRNA upstream 122532 66504262 ~ 66504487 (-) True G737405
TU837357 lncRNA upstream 123334 66505064 ~ 66505338 (-) True G737406
TU837358 lncRNA upstream 125145 66506875 ~ 66507076 (-) True G737407
TU837394 lncRNA upstream 136765 66518495 ~ 66596241 (-) False G737426
XM_036986007.1 mRNA downstream 6009 66273788 ~ 66332261 (-) True LOC110530388
XM_021613388.2 mRNA downstream 6010 66273788 ~ 66332260 (-) False LOC110530388
XM_021613384.2 mRNA downstream 128242 66192359 ~ 66210028 (-) False LOC110530385
XM_021613383.2 mRNA downstream 128242 66204435 ~ 66210028 (-) False LOC110530385
XM_036986004.1 mRNA downstream 241319 66076814 ~ 66096951 (-) True LOC110530374
XM_021613397.2 mRNA upstream 8474 66390204 ~ 66418007 (-) False LOC110530391
XM_021613395.2 mRNA upstream 8474 66390204 ~ 66433724 (-) False LOC110530391
XM_021613399.2 mRNA upstream 8474 66390204 ~ 66433724 (-) False LOC110530391
XM_021613396.2 mRNA upstream 8474 66390204 ~ 66433725 (-) True LOC110530391
LOC118965631 mRNA upstream 228573 66610303 ~ 66618598 (-) True LOC118965631
TU836773 other downstream 128279 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 236643 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 809687 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1298029 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 4153090 62180687 ~ 62185180 (-) True LOC110530961
TU837419 other upstream 177466 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 331963 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 999490 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 1039009 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 1042133 67423863 ~ 67425339 (-) False G738504

Expression Profile