RNA id: XM_021613395.2


Basic Information

Item Value
RNA id XM_021613395.2
length 4878
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC110530391
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66390204 ~ 66433725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataggtgagagagacagaagtaGATAGCACTTCGAACTGTGCCTCGAAAAGGTGAGAGGGACTAGAGTAGTATACTTTCTCAGAATAGAGCCAATGCGGTGAGGGGATAAAATGCCCACCAACTTCACTGTGGTTCCTGTAGAGGATGGCGGGGCCGGGAAGTCAACTCTCGAAGGTGTGTTTAGTGAGGAAGATGAAGAAGACGTTTCTCCACGACGGCCCTACTCAGGAGATGTCACTCCCAGAGAGAGCAGCCCTTTCATCAACAACACTGACCAAGACCAAGAAAACTACTACGATGGCAAAAACATGGCTCTCTTTGAGGAAGAGATTGAGAGCAACCCCATGGTGTCCTCCCTCCTCAACAAGCTGGCTAACTACACCAACCTCACCCAGGGGGTCACTGAGCATGAGGAGTATGAAAATGAGGAGGGGGTTACAAAGATTAGAGTCAAGAGTCCTCAGATGGGCACATTCATCGGCGTGTACCTGCCCTGCATGCAGAACATCCTGGGAGTCATCCTCTTCCTGCGTCTCACCTGGATCGTTGGCACCGCCGGCATTTTGGAGTCTTTCGCCATCGTCGTCATGTGTTGCACCTGTACCATGCTGACAGCGATATCCATGAGTGCTATTGCAACAAATGGGGTAGTGCCAGCCGGAGGCTCCTACTACATGATCTCCAGGTCTTTGGGACCAGAGTTTGGTGGGGCTGTGGGCTTGTGTTTTTACCTGGGAACCACATTCGCTGGCTCCATGTACATCCTGGGTACCATTGAGATCCTTCTGACGTACATCGTGCCGAACGCTGCAGTGTTTGTGGCGGAGAAGAAGGAGGGCGAGGCGGAGGCCATGCTGAATAACATGCGTGTGTACGGGACTTGCTGCCTGGCTCTCATGGCTCTGGTGGTGTTTGTGGGAGTCAAATATGTCAACAAGCTGGCCCTGGTCTTCCTGGCCTGTGTGGTGCTCTCCATCATGGCCATCTACGCCGGAGTCATCAAGACCGTCATAGAACCACCAGACTTCCCAATCTGTCTCCTGGGGAACCGTTCCTTACAGAACCACAACTTTGAGAAGTGTGTGAAGACAGAGGTGATCAAGAACGTGACGTACACCACTAAGCTGTGGGAGCTGTTCTGTGACAGCCGCCACCTCAACGCCACCTGTGATGAGTACTTCACCCTGAACAACGTCACTGAGATCCAGGGCATCCCAGGCCTGCTCAGTGGGGTCATCAAAGACAACATGTGGGGGGACTACGGGCCCAGTGGGATGCTGGTAGAGAAGAAGAGGCAGTCATCTGTTCCAGCCCAGGATAACTCCAGAGATATCTACATGCCTTACGTCTTCAACGACATCTCCACCTTCTTCACTCTGCTGGTGGGAATCTACTTCCCCTCCGTCACAGGAATCATGGCGGGCTCCAACAGATCTGGAGACCTCCGAGATGCCCAGAGGTCTATTCCTTTCGGCACCATCCTGGCCATAGCAACCACTTCTTTCATTTACATGACCTGTGTTGTGCTATTTGGGGCCTGTATCGAGGGTGTTGTTTTGAGAGACAAATTTGGGGACTCTGTCAAGAAGAACTTGGTGATTGGAACTCTGGCATGGCCTTCTCCATGGGTGATCGTGATTGGCTCCTTCTTCTCCTGCTGTGGGGCAGGGCTGCAGAGTCTTACTGGTGCCCCTCGTCTGCTGCAGGCCATAGCACGTGACGGGATTGTCCCCTTTCTGCAGgtGTTTGGTCATGGTAAAGCCAATGGGGAACCTACCTGGGCCCTCTTGATGACCGCTGGGATCTGTGAGATTGGAATCCTTATTGCATCACTGGATGCTGTTGCCCCCATTCTCTCAATGTTTTTCCTGATGTGCTACCTGTTTGTCAACCTGGCCTGTGCCGTCCAGACACTGCTCCGCACTCCCAACTGGAGGCCCAGGTTTAAGTTCTACCATTGGACGCTGTCATTCCTGGGGATGAGCCTGTGTGTCTCCCTCATGTTCATCTCCTCCTGGTACTACGCTCTGGTAGCCATGTCCATCGCTGGATGCATCTATAAGTACATTGAGTACAGAGGGGCAGAGAAGGAGTGGGGAGACGGGATCAGAGGTCTCTCCCTGAACGCTGCCCGGTACGCTCTGATCCGCCTGGAGGAAGTGCAGCCACACACTAAGAACTGGAGGCCTCAGTTACTGGTGTTACTGAAGCTGGATTCAGACTTGGGGGTGAAACACCCTCGTCTGCTGTCCTTTACCACCCAGCTGAAGGCAGGGAAAGGTCTGACCATCGTCAGCTCTGTGTTGGAGGGCACCTACATGACCCTGGGGGCTGAGGCCAAGAGCGCAGAGCAGAATGTCAAGTCGGCCATGCACGCAGAACGTACCAAAGGTTTCTGCCACGTGGTGGTGTCCTCTAACCTGAGGGATGGTTTCTCCCACCTGATCCAGTCGGCAGGGCTGGGGGGCATGAAACACAACGCCGTCCTCATGGCCTGGCCAGGGGCCTGGAAACAGGCTGAGGACTCCTACCCCTGGAAGAACTTCATTGAGACGGTGAGAGAGACAACGTCAGCCCATCAGGCCCTGCTGGTTGCTAAGAACATTGACAAGTTCCCCAGCTCTGAGGACCGTCTGGGGGAGGGCACCATAGATGTGTGGTGGATCGTCCATGATGGAGGCCTTCTCATGCTGCTGCCTTTCTTACTGCGCCAACACAAGGTGTGGAGGAAGTGTAAGATGCGTATCTTCACCGTGGCTCAGATGGATGACAACAGTATTCAGATGAAGAAGGACCTGCAGATGTTCCTTTACCACCTCCGTCTCAATGCtgtagtggaggtggtggagatgCACGATAGTGACATTGCAGCCTTCACCTATGAGAAGACCCTGGTGATGGAGCAGCGCTCTCAGATGCTGAAACAGATGCAGCTGTCCAGGaacgaaagggagagagagATTCAGAGCATCACAGACGAGTCGCGTATCTCCATCAAGAGGAAGAAGTCATCAGTGGTGGAGACACTAAAGGCCCCAAACACACTACAGGTCCCAAGCCTGTCCATTTCCAGGGACATGGATGAGGAGGCTCAGCTGATCACTAAACTGGGCACTAAGTCGCACGGCAACCTCAACGACAACGCTCCCGCCACGCCCGACCACCGCGTCCACATGACCTGGACCAAAGACAAGCTGATCACCGAGAGGAACCGTAACCGCAGCGAACCCAACGTGGGCGTGAAGGACCTGTTTAATATGAAACCCGAGTGGGAGAGTCTGAACCAGTCTAATGTGCGGAGGATGCACACCGCGGTCAAGTTGAATGAGGTTGTGGTCAACAAGTCCCAAGGTGCTCAGCTGGTGCTGCTGAACATGCCTGGGCCGCCCAAAACCAAGGGAGGAGATGAGAATTACATGGAGTTCCTGGAGGTTCTTATGGATGGGCTGGACCGGGTGCTGCTGGTGCGTGGCGGAGGCAGGGAGGTGATCACCATCTATTCTTAGCGCCAGCAGACACAAGGCGGGCATGGTGCAGCCTCGGAGCCTCCGGTGTGGCCGGCCAGCCAAGTGGCTGGGCCTCAGCCTCTGCCACAGTGCCAGGAGAGGAGCTGGGCGCCCCCTACAGTATGGGAGGACAGTAGGGGGCTACCTCCACTCTTAGAGCAGGCTGAGCACACACCGCTGCTGACTGGTGGAGGACATCAGAGGGCACTCTGGATCATCCTCCCTTTTTATTTCTTGTCATATTCCTTTCAGGTTTTCCATGTCAGTCGTTATGAATAGGAGTTGTTTCAGTAGAACAAAGTGCATGAGTAATGATATTAGATTAGATAGAGACGTCCTCTGATGACATAGCTCAGGGCACTAATGCAGTATGGTCTAGTCCAGTGATTCCCAAATTGTAGTGCGAGCGAGGAGTCAGCGGGGGAGGGGGGCGCAGTAAACTATACTGCATTAGTGCCCTGAGCTATGAGCAGAGGATGTCTCTGTTGACATAGCCCCCCACTCTGTCcggctttcaacttactcttgaaagttgtaatagtagaatgcccAAATTGCAATTTCATTGAGTAGTAATGCATTGGGTATTTTTCCTCTtgtcattgcataccttagagagctatttataacttgtcataaatgtccagatcaactagcccatggcAGCTAATGGTTTTTAGCTtttgcccatagaaatagacttGGCACGCGTGCAGGATGTTTCCCAATGCTGGAatgaaaaggtttgggaacccctggtctAGCCTTTAGCTGATATGGGATGTAGCTTGTAAGTTCAGATGGTAGACAGGTGTTTAAATAGCAGGTTGGGCAGCCTACTGCAGTAGGCCACAATACAAATATGTAGTTTTGTTACACTAAATTAGATAGGTTATGTTTTATTTTACAGTACTATTTAAGGTAATTATTAAGTAACTGTTATGTAACTACTTTTTTTCCCATAGAATGTCTGTGTAAATACCTGATCAAACAGCTTTAAAATAAAGTCATAGCCAGGAGATATGGATATGCTATACACAATAGTTTTGTATTTGAAACAGTTCTCACCAAAGCAAAACTCTTGAGATTTTTGTGGTCCATTGTGGTGACCAAActtaatatactgtacattaagatAATCACCAGGCTTCATTTGATCTAATCAAATGACGGGCCTTTATGGTTTGGATTCTGTGTCAGAGATGAGGCAGAACAGAAGTCAAACTGTACATTCTGATCCTCGAATGTCTAtgagtgcgtcccaaatggcaccctattccctatttagtgcactacttttgaccagagcctacaGTTgagggatcttaatttgagccagtttgctacaacaggaaaatagtcctgcagcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836867 lncRNA downstream 84115 66305819 ~ 66306089 (-) True G736973
TU836862 lncRNA downstream 90083 66294377 ~ 66300121 (-) True G736968
TU836855 lncRNA downstream 104006 66285763 ~ 66286198 (-) True G736963
TU836850 lncRNA downstream 113448 66276452 ~ 66276756 (-) True G736958
TU836831 lncRNA downstream 119926 66269825 ~ 66270278 (-) True G736944
TU837355 lncRNA upstream 69758 66503482 ~ 66503709 (-) True G737404
TU837356 lncRNA upstream 70538 66504262 ~ 66504487 (-) True G737405
TU837357 lncRNA upstream 71340 66505064 ~ 66505338 (-) True G737406
TU837358 lncRNA upstream 73151 66506875 ~ 66507076 (-) True G737407
TU837394 lncRNA upstream 84771 66518495 ~ 66596241 (-) False G737426
XM_021613394.2 mRNA downstream 8474 66338270 ~ 66381730 (-) True LOC110530389
XM_036986008.1 mRNA downstream 8808 66338270 ~ 66381396 (-) False LOC110530389
XM_021613389.2 mRNA downstream 24416 66338270 ~ 66365788 (-) False LOC110530389
XM_021613391.2 mRNA downstream 24416 66338270 ~ 66365788 (-) False LOC110530389
XM_021613392.2 mRNA downstream 24417 66338270 ~ 66365787 (-) False LOC110530389
LOC118965631 mRNA upstream 176579 66610303 ~ 66618598 (-) True LOC118965631
LOC110530964 mRNA upstream 189789 66623513 ~ 66632180 (-) True LOC110530964
LOC118936436 mRNA upstream 200201 66633925 ~ 66636934 (-) True LOC118936436
XM_021613409.2 mRNA upstream 216139 66649863 ~ 66658816 (-) True LOC110530394
XM_021613411.2 mRNA upstream 238736 66672460 ~ 66682940 (-) False elovl1a
TU836773 other downstream 180213 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 288577 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 861621 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1349963 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 4205024 62180687 ~ 62185180 (-) True LOC110530961
TU837419 other upstream 125472 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 279969 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 947496 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 987015 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 990139 67423863 ~ 67425339 (-) False G738504

Expression Profile