RNA id: LOC118936436


Basic Information

Item Value
RNA id LOC118936436
length 1128
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC118936436
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66633925 ~ 66636934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaGGGGGGGTCATGGGGTTACAGTGTTCTTGGCCTTTTAAGGCAGGGCCAACAGGGGTTAAATATGATCTCTGCTATTGCAGGGATACAGTTCTGGAGCCTCCATTCATCTTCACCTCTTAGCAGTGTTGAAGTGCAACCATGGGTGATGCTGAGATGGCGGTGTTTGGGGCGGCAGCCCAGTACCCGAGGAAATCTGACCGGGAGCGTCTGGAGGCCCAGACTCGTCCCTTCGACATGAAGAAGGAATTCTTTGTACCAGACCCCGTGGAGGAGTTTGTCAAGGTGTCCGTCACCAGCCGCGAAGGAGACTTGGTCACTGTGCAGACGCAGAATGGGAAGACTCTCAGATTATGCAAATTTGACAAGATTGAGGACATGGCCATGCTGACCTTCCTCCACGAGCCTGCTGTTCTGTACAACCTCAAAGAGCGTTACGCAGCATGGATGATCTATatCTACTCAGGGCTGTTCTGCGTCACTGTCAACCCCTACAAGTGGCTGCCAGTGTATGATCCATCTGTGGTCATAGCCTATAGAGGCAAGAAGAGGCAAGAAGCTCCTCCCCAACATTTTCTCTATCTCTGACAATGCCTATCAGAACATGTTGACAGACTGTGAGAACCAGTCTATTCTGATCACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACCAAGAGAGTCATCCAGTACTTTGCAAGCATTGCAGCTAGTGGCGGGAAGAAAGATGCAGCCGCCCAAAACAAGGGAACTCTGGAGGATCAAATCATCCAGGCTAACCCAGCCCTGGAAGCCTTTGGTAACGCCAAGACCATCAGAAATGACAACTCCTCAAGATTTGGTAAATTTATCAGGATTCATTTTGACACTCAAGGAAAGCTTGCTTCTGCTGATATTGAGACATACCTGCTGGAGAAGTCTCGTGTCACTTTTCAGCTGAAGGCTGAGAGGGACTACCACATCTTCTATCAGATCTTGTCAAACAAGAAACCTGAATTACTGGagatgttGCTGGTGACAGCTAATCCCTATGACTACGCCTTCATCTCCCAGGGGGAGACAACTGTGTTGTCTATTGATGACGCTGATGAACTGATGGCAACAGATGTGAGTCACTCTGGCCCCTGA

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837444 lncRNA downstream 14153 66619461 ~ 66619772 (-) True G737472
TU837443 lncRNA downstream 16656 66616861 ~ 66617269 (-) True G737471
TU837438 lncRNA downstream 30768 66602940 ~ 66603157 (-) True G737466
TU837434 lncRNA downstream 35227 66598267 ~ 66598698 (-) True G737462
TU837392 lncRNA downstream 37684 66590338 ~ 66596241 (-) True G737426
TU837386 lncRNA upstream 11216 66648150 ~ 66648459 (-) True G737421
TU837478 lncRNA upstream 50157 66687091 ~ 66687623 (-) True G737503
TU837479 lncRNA upstream 56995 66693929 ~ 66694168 (-) True G737504
TU837490 lncRNA upstream 69754 66706688 ~ 66707910 (-) False G737512
TU837487 lncRNA upstream 70104 66707038 ~ 66707854 (-) False G737512
LOC110530964 mRNA downstream 1745 66623513 ~ 66632180 (-) True LOC110530964
LOC118965631 mRNA downstream 15327 66610303 ~ 66618598 (-) True LOC118965631
XM_021613396.2 mRNA downstream 200200 66390204 ~ 66433725 (-) True LOC110530391
XM_021613395.2 mRNA downstream 200201 66390204 ~ 66433724 (-) False LOC110530391
XM_021613399.2 mRNA downstream 200201 66390204 ~ 66433724 (-) False LOC110530391
XM_021613409.2 mRNA upstream 12929 66649863 ~ 66658816 (-) True LOC110530394
XM_021613411.2 mRNA upstream 35526 66672460 ~ 66682940 (-) False elovl1a
XM_021613412.2 mRNA upstream 35526 66672460 ~ 66682940 (-) False elovl1a
XM_021613410.2 mRNA upstream 35526 66672460 ~ 66682947 (-) True elovl1a
NM_001124314.1 mRNA upstream 161609 66798543 ~ 66801779 (-) True gs02
TU837419 other downstream 73408 66559196 ~ 66560517 (-) True G737449
TU836773 other downstream 423934 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 532298 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 1105342 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1593684 64990301 ~ 65040241 (-) True G735880
TU837387 other upstream 76759 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 744286 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 783805 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 786929 67423863 ~ 67425339 (-) False G738504
TU840819 other upstream 2513409 69150343 ~ 69157726 (-) True igfbp1

Expression Profile