RNA id: XM_021613409.2


Basic Information

Item Value
RNA id XM_021613409.2
length 2280
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC110530394
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66649863 ~ 66658816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTCACGACGCAGCCATTTGAAACAACGCCAGTTTCGTGAGgaggagctagctaacgttagttattaGCCAGCCTTTCGTTAACGAAGCTACCTAACTTACATATTCGCATTTATTAGAGACCCTCCGACAATAAACCACCAAGATGTTCAACAGAATGACAAGCCTTTGGATGGGTGATCTGGACCCATACATGGATGAGAATTTCATCAAACAGGCCTTCAGCACTATGGGCGAGACGGCGTATGGTGTTAAGATCATTACCCACAGAGTAACGGGAGGATCGGCAGGCTATTGCTTTGTGGAAATGGCAGACGAAGCTAGCGTTGACCGATGCGTTCACAGACTGAATGGGAAGCTTGTTCCTGGATCAAACCCGCCCAGAAAGTTTAAGTTAAACTATGCAACTTATGGGAAACGGCCAGAAGCTGGCCTGGAATTTTCAGTCTTTGTCGGAGATCTGTCTTCAGAGGTGGATGACTACCAGCTCCATCAGTTCTTCCTGAAGAAGTACCCTTCCTGCAAAGGAGGGAAAGTGGTCTCTGATCAGTATGGTAATTCCAGAGGTTATGGTTTCATCAAGTTTGGGGACGAGAACGAACAGAAGAAAGCCATCGATGAGTGTCAGAACGCCACAGGCCTGGGGACGAAACCAATCAGGATCAGCATAGCTGTGAACAAGAGCCATAAAATGAACAGCTATAACAACCAGAACCACAACTCCTACCACAACAATTACCAACAGCCGTACTATCAACAACCCAACCAGAACTATTACCCTCATTGGGGCTATGACCAGTACAACAGCTATAACTATGGTGGCTATGGTCCCTATGGAGGGTACCCTGCTCCAGGCCCCCATGGGATGATGGGACCCCCACCTCCCATTGGCATGCCCCCCATGCCCACAGACATGCAGACTTCCTCCGAGCAAACACAGGAGTCCACAAATGAGCCTGAAGAAGAGGCAGCAGAAGACCCCAACCCTCAGCTGGATGTGGATGCACTGAACACAGAATACATGGAGAGGAGCGAGGAGCTCTACGATTCACTCATGAACTGTCACTGGCAGCCACTGGATACCATCACGTCAGAAATCCCGCCTTTTTCCAGTTCCTGATCTGTTTCAACTTTCCAGTTTAGTATGAAATTAATTTTCTATAAAAGGGTAAAGTTGTgcagaaaatgtatttttctttatCACCAGTAGACACAGCATGTTTCTTCACTACTGCCTTTGCCATTTGTATATATTGTTCACATCCTTCCccttttgtatttttatttaatggAAGTAATGTTATTTTTCGGTCTGCACTAAACTTTCCTTCTAAATTAAAGTCTAAGTCTAAAAAATCTAAATCTAAGTCTTTCTGGCAGTGCGTTTGTTTGATTCAgaaactgcatttttttttttttttgattaaaTGAAGTAATCAATGGTCGTCATCTCCCAGAcatgaatttgtatttattttcaggAAGAAagaacatttgttttatttttcgCAGATTAAAAACTTCAATTTAAGGTTATATTTCAACAGTTTGTATCACACCTTTTACTTGTGCTTTAATCTTCTTTTTTAAAATTTAAAGTTGCATTATACAGCAATTggtctgccatttcctggttgctaaaattctaattgcttgttttgtcaaacTGAAATTAAGCGAActatgtatagtgtagagaatcattgtaccctctaaaccgctgtgaaatatattttcaataaccaaaaatattgtgttTGCAGATTATGTAcctgaagtaaaagttgtaaaaactaAACTTAAATGTGAAGCATCTACACATTAGGTTTGCTTTAAATGAGTGACGGCTCTAactcatatttctatgtgaatttggtcgtgACACGCAAGAAATGTAACTCAATTGCTATTGGtcatgcacatatttagcagatggtattgtgggtatagcgaaatgcttgtgttcctagctccaacagtgcagtagataCCTTTTCATTCATTCTCAtgatatacattttgttttagacTTGTAATTCATTTTAGCTTTTTTTGTGCCTGGAGCTTTTGGAATAATTCTATTAAAGCTGACTTGGGGGGGTGGGACAGGACGTTGAAGTTGTCTGGTATGTATTATCCAATTATGTGACACCGAACATTTGTGCTTATGCAAAGTTCAGCGCTCGTTCATTTAGTCTGGTTTTCAGAACCACAATTGAACTTCTTACATTACTTGCACTGTCAGATGCATATGTTCAAAAATAAACAGCCTTATGTAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837386 lncRNA downstream 1404 66648150 ~ 66648459 (-) True G737421
TU837444 lncRNA downstream 30091 66619461 ~ 66619772 (-) True G737472
TU837443 lncRNA downstream 32594 66616861 ~ 66617269 (-) True G737471
TU837438 lncRNA downstream 46706 66602940 ~ 66603157 (-) True G737466
TU837434 lncRNA downstream 51165 66598267 ~ 66598698 (-) True G737462
TU837478 lncRNA upstream 28275 66687091 ~ 66687623 (-) True G737503
TU837479 lncRNA upstream 35113 66693929 ~ 66694168 (-) True G737504
TU837490 lncRNA upstream 47872 66706688 ~ 66707910 (-) False G737512
TU837487 lncRNA upstream 48222 66707038 ~ 66707854 (-) False G737512
TU837489 lncRNA upstream 48222 66707038 ~ 66707910 (-) True G737512
LOC118936436 mRNA downstream 12929 66633925 ~ 66636934 (-) True LOC118936436
LOC110530964 mRNA downstream 17683 66623513 ~ 66632180 (-) True LOC110530964
LOC118965631 mRNA downstream 31265 66610303 ~ 66618598 (-) True LOC118965631
XM_021613396.2 mRNA downstream 216138 66390204 ~ 66433725 (-) True LOC110530391
XM_021613395.2 mRNA downstream 216139 66390204 ~ 66433724 (-) False LOC110530391
XM_021613411.2 mRNA upstream 13644 66672460 ~ 66682940 (-) False elovl1a
XM_021613412.2 mRNA upstream 13644 66672460 ~ 66682940 (-) False elovl1a
XM_021613410.2 mRNA upstream 13644 66672460 ~ 66682947 (-) True elovl1a
NM_001124314.1 mRNA upstream 139727 66798543 ~ 66801779 (-) True gs02
XM_036986028.1 mRNA upstream 396342 67055158 ~ 67126011 (-) False LOC110530968
TU837419 other downstream 89346 66559196 ~ 66560517 (-) True G737449
TU836773 other downstream 439872 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 548236 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 1121280 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1609622 64990301 ~ 65040241 (-) True G735880
TU837387 other upstream 54877 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 722404 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 761923 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 765047 67423863 ~ 67425339 (-) False G738504
TU840819 other upstream 2491527 69150343 ~ 69157726 (-) True igfbp1

Expression Profile