RNA id: XM_036986027.1


Basic Information

Item Value
RNA id XM_036986027.1
length 4340
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC110530968
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67055158 ~ 67176168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCGGTGTGTTGTTGAGATGATAGGTTGTGCATAGTCCGTTTACTTCACTTCTCATGCAGAACGCGTCCACCGAGGCGCCACTGGTTCTCGGCGtccttcacacatacacacacaccgggTCTTTCTTGCCGCCAAACAGCTGTTGAAAGTCTAGCAGCCTTTTTAGTTATTTTGATTGGGTTACATTTTCTGAGACTGTATTGAATATCAGATTGGATACCCACAGAGACGGGCTGCTATCGCGCCGTGAGAAGGCATCAACGAACTGAAGAGGGGAACCAGCGTGCTCTGAATACAGACACAGATTATTAACGTCCTACTGTAGCCTTGCTCACCGCTCCcttaggacaaaacacatccaATCGATCAGAGGACTTGCTTGTTAGGCTATGTTTGTTTTATAATTCAACCAGGAAAACGTTTTCAGTTTTTACTAGTTATTTTATCGGGATAATTTACCTGTTCTCTTTGGAACCATCTCCGCTTTATTCCAGAGGATAAATTGGCCACCCGCTGTCGGATCTCTCCAAAGCCACTGAAAATAAGCAGTAGCCTACACTCGTCTCCGTATACGAGAGGTTTCTCTTGCTTTGACATGCTGTAGTGGTTTTGACTGTACTTATGGCTTCGCTGTATCAGAGATTCGCCGGTAAGATCAATACGAAGAATTCTTTCCCACACCCACCTGAGGCCAGCCACCTACTCGGCGGACAGGTAGCGGACGAGGAGAACAACACACGGAAGACCCCGCAGCCCGTGGCCGACGGCAGACCCCATGTTCCCCACCGAAAGAAAAATGCGAACGAGGACGAGCGTgaCCTGGTGGGCAGTGcccctccacagaggaactggaaGGGGATAGTCATCGCCCTGCTGGTCATCTGCATCATCTTGTCTCTGATCGTCACCTCTGTCATCCTGCTCACCCCAATTGCAGATGATAGCCTTGCCCTCAAGAAGAAAGTCACCATTGAGGACGTCTTCGGAGGAGATCTTCACGTGCACGACCCCGACGCTACATGGCTCAGTGACAATGTACTGCTGTATCGAACACGAGAAGGGGACGTGGTCAAACTCAACATCGAAACACAGGAGAGGGTCATTTTGGTGGAGAACAGGAAGTTTGAAATGTTCAAAGCCACCAAGTACCACATATCTCCAGACCTGGAACATGTGTTGTTGGCCTACAACGTGGCTCCAGTCTACCAGCACTCCTACATGGCCTTCTACATCATCTGTAGTCTCATCACCCCGGAGACATGGAGTCTGAATCCTCCTGAGGTACGGAATGCCCCGCTGCAGTATGCTGGATGGGGACCTAAGGGCCAACAGCTGATCTTTATCTTTGAGAACAACATCTACTACAGAGCAACGGTGGAGAGCAGGACCATTCGCCTGGTGTccacagggaaggagggagtcaTCTTCAACGGCCTGAGTGACTGGCTGTATGAGGAGGAGATCCTTCAGACCCACATAGCCCATTGGTGGTCTCCAGATGGTCTCAGACTGTCCTACGCCACCATCAACGACACCCTGGTGCCCAAGATGGAGGTCCCTATTTTCACTGGCGCCCCGTATCCAATAGGGCTGGAGTACCATTACCCCAAGGCTGGGGAGGAGAACCCTGTAGTACACCTGTCTGTAGTGAGTTTGAACGGCCCCCTTCACACGGTGGAGATGAAGAAACCTGACGACCCCAGGATAGGAATGGAATATTACATCACAATGGTTATGTGGGCCACCACCACCAAGCTGGCAGTCAACTGGTTGAACAGAGCCCAGAACAACTCCATATTGACACTGTGTGAGGCCACCACAGGAGTCTGCACTAAGAAACATGAGGATGAAAGTGATAGCTGGCTACACAAACAGAACGAAGCGCCACTCTTCTCCCATGATGGATACAAGTTCTTCTTTACCAGAGCTATACCTCAGGGTGGGAGGGGCAAGTTCTTCCATATCTCCATGTCAACCTCCCAGCCCAACACCAGCACAGACACGCTGCAGTCCCTGACATCAGGAGACTGGGACGTTACTCAGATACTAGCTTACAGCCAAGACAAGCAGCTCATATACTTTTTGAGCACAGAGGATGATCCAAAACGACGACACCTCTACAGTGCGGACACTAAAGGCCCGTTCAACCGCCGCTGTCTGTCATGTGAGTTCAAGTGTGGCTATGTGGAGGGCTCCTTCAGCCACAACATTCAGTACTTCCTGCTTAACTGTAAAGGCCCCGATGTACCCAGTGTTGCCATCTACAGCAcaaaagacagacagaAGGTCCTGGACCTGGAGACTAACGAGGGAGTGAATAACACGTACCACAGCATGCAGATGCCCAAAGTGGAGTACGAGACCATCACCATAGACGATTACACTCTGACGATGCAGATTCTGAAGCCAGCTGGTTTCATAGACACAGCTCACTACCCCCTCCTGCTACTAGTGGACGGAACGCCTGGCGGACAGATGGTGACAGAGCAGTTCCGTGTGGACTGGGCCACGGTGCTGGTGAGCAGTTATAGCACCATTGTGATCCGCTTTGACGGCCACGGGTCCGGGTTCCAGGGCACCAACCTCCTCCACCGCATCAGGAGGAAACTGGGCGTGATCGAGGAGAGGGACCAGATGGAGGCCCTCAGACTGATATCGAAAGAAATGTACATCGACAAAAGTCGAATTGGAGTATATGGAAAGGTTTATGGAGGATATTTAGCCACCCTGCTTTTAAGTTCTGAAGACTCCCTGCTTAAATGTGGAGCAGCCGTCTCGCCCATCACAGATTTCAAGTTATATGCTTCAGCATTTTCAGAGAGATACCTTGGATCACCAAAGACAGACTCTCGAGTATACTCGGTGGCAAGTTTAGCACACCGGGCAGCTCACCTAATGGACAGGAAGTACATGATCATCCATCCAACTGCTGATGAGAAAGTCCATTTCCAGCACTCTGCAAAATTCATCAACCATTTAATCAATGAGAAGGCAAATTACTCTCTACAGATCTACCCAGATGAGGGACACTTCCTGCATAGCGATGGCACACGGCAACACCTGAGCCAATCACTAGTTAACTTCTTTGAGGAGTGTTTCCGACTGCCAGACTTACCAAGTGAGGAGAAGAAGGACaaggaggatgagggagatgTTTAAACCAGCTGACACGTGGTTAACACTCCAGCTACCACAGCACAATATGCAACAAATCCTTCTCAACTCATTACCCCCACCCCTATCTTGGCCCAGAtcggtttgtgctgtcttgccaactctgATGGTCAGCTGTGACAATGCTCATTTAGTGTTGGCATTGGCACGCCAGATCTATGAGCAGGCCAACCTACTCCACCCTCTGTATAATTTGGGCTCCTCTTTAGAGCACAGTACCTGCATGTACCAAGGACCTCACACCTCACTCTTTATTCTTCATCACTTTTGGTTGGCTGACAACTGGACTGGCCAGCAAGACATCTCCATCGTGGATGTTGTTGACTttggtataaaaataaaaatgtcttaGCAGTGAACAAATAATCTGGTCACTGAAGAGCCCTCTAGTAACCCCCCTTGTGGACAGCTAAAGTAGTGAACCACCACTCCAACTTGTCTGACTGCATTTCCtctcccaccacacacacaagtaaATCTATAGTGGGCAACGAACATCAAGGGTCATTTTCATTGCAGTAAACATGGAAGAGCTACCGGTTGACTCCAGCAGAGTTTGTGTCCATGATTCTGATGTTAAAACAGCAGCACACAGAACAATGTATTTCTCTTAATTGCTGTTTGTAATGTTCAATATGTCCTTCAGTAAGTAATGTGGCTTTGAGTTAATGTATGGTGGTCACATCGGCCCATGATTTCCTTTCCAAATGACTGAGGGTACAATGTTATGATCCCAAAGTTAAAGTAATACATTTGGAGTGGTTGCTCTAGTGTTATGGAAGGGCACAATTCAATCCGTAGCGCTGAAGATCTGTGCTATAGCGcaattgaaatgtaaaggtaacTTCTGAATGTGGGAACATTGCTTTAAAATTTGTAGTGCAGGTTCTTCAGTGCTACTGATTGAGTCGAGCGCTTAGTCACTGTGCCTTACTACTGGGGGTAAACATATTCATGTCAAGGACTATAACACTTTTGTAACATTTAATTTTTCATCTAAGAAAGATTTGTACATTGGACATAATTTACTTGAGTTGAATCATTGCTCAGACTAGTCCATATGGTTGAAAATGTACTGCGATTTTATAACTCCCATTATAAAAGTGTACTATTATTCTTGTATAATAGACACAAACATGGCAGTTCTGGCTGTTGTAACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837915 lncRNA downstream 19491 67035362 ~ 67035667 (-) True G737897
TU837645 lncRNA downstream 118623 66936333 ~ 66936535 (-) True G737655
TU837591 lncRNA downstream 186973 66867575 ~ 66868185 (-) True G737609
TU837567 lncRNA downstream 223008 66831945 ~ 66832150 (-) True G737585
TU837564 lncRNA downstream 226667 66828263 ~ 66828491 (-) True G737582
TU838051 lncRNA upstream 56132 67232282 ~ 67232497 (-) True G738022
TU838068 lncRNA upstream 63735 67239885 ~ 67240107 (-) True G738039
TU838080 lncRNA upstream 69443 67245593 ~ 67245937 (-) True G738051
TU838462 lncRNA upstream 95781 67271931 ~ 67291670 (-) False G738397
TU838464 lncRNA upstream 114026 67290176 ~ 67291670 (-) True G738397
NM_001124314.1 mRNA downstream 253379 66798543 ~ 66801779 (-) True gs02
XM_021613410.2 mRNA downstream 372211 66672460 ~ 66682947 (-) True elovl1a
XM_021613411.2 mRNA downstream 372218 66672460 ~ 66682940 (-) False elovl1a
XM_021613412.2 mRNA downstream 372218 66672460 ~ 66682940 (-) False elovl1a
XM_021613409.2 mRNA downstream 396342 66649863 ~ 66658816 (-) True LOC110530394
XM_021613428.2 mRNA upstream 301842 67477992 ~ 67528795 (-) False LOC110530404
XM_036986041.1 mRNA upstream 338926 67515076 ~ 67528795 (-) True LOC110530404
XM_036986042.1 mRNA upstream 353655 67529805 ~ 67537441 (-) True kdsr
XM_021613430.2 mRNA upstream 361602 67537752 ~ 67562514 (-) False LOC110530405
XM_021613429.2 mRNA upstream 361602 67537752 ~ 67570811 (-) True LOC110530405
TU837387 other downstream 340662 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 494641 66559196 ~ 66560517 (-) True G737449
TU836773 other downstream 845167 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 953531 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 1526575 65518167 ~ 65528583 (-) True G736216
TU838543 other upstream 205070 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 244589 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 247713 67423863 ~ 67425339 (-) False G738504
TU840819 other upstream 1974193 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 2232818 69408968 ~ 69430653 (-) False G740718

Expression Profile