RNA id: XR_005052935.1


Basic Information

Item Value
RNA id XR_005052935.1
length 3090
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110530968
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67055158 ~ 67176168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTACAGTATGCTATAGTCTGCGGTGTGTTGTTGAGATGATAGGTTGTGCATAGTCCGTTTACTTCACTTCTCATGCAGAACGCGTCCACCGAGGCGCCACTGGTTCTCGGCGtccttcacacatacacacacaccgggTCTTTCTTGCCGCCAAACAGCTGTTGAAAGTCTAGCAGCCTTTTTAGTTATTTTGATTGGGTTACATTTTCTGAGACTGTATTGAATATCAGATTGGATACCCACAGAGACGGGCTGCTATCGCGCCGTGAGAAGGCATCAACGAACTGAAGAGGGGAACCAGCGTGCTCTGAATACAGACACAGATTATTAACGTCCTACTGTAGCCTTGCTCACCGCTCCcttaggacaaaacacatccaATCGATCAGAGGACTTGCTTGTTAGGCTATGTTTGTTTTATAATTCAACCAGGAAAACGTTTTCAGTTTTTACTAGTTATTTTATCGGGATAATTTACCTGTTCTCTTTGGAACCATCTCCGCTTTATTCCAGAGGATAAATTGGCCACCCGCTGTCGGATCTCTCCAAAGCCACTGAAAATAAGCAGTAGCCTACACTCGTCTCCGTATACGAGAGGTTTCTCTTGCTTTGACATGCTGTAGTGGTTTTGACTGTACTTATGGCTTCGCTGTATCAGAGATTCGCCGGTAAGATCAATACGAAGAATTCTTTCCCACACCCACCTGAGGCCAGCCACCTACTCGGCGGACAGGTAGCGGACGAGGAGAACAACACACGGAAGACCCCGCAGCCCGTGGCCGACGGCAGACCCCATGTTCCCCACCGAAAGAAAAATGCGAACGAGGACGAGCGTgaCCTGGTGGGCAGTGcccctccacagaggaactggaaGGGGATAGTCATCGCCCTGCTGGTCATCTGCATCATCTTGTCTCTGATCGTCACCTCTGTCATCCTGCTCACCCCAATTGCAGATGATAGCCTTGCCCTCAAGAAGAAAGTCACCATTGAGGACGTCTTCGGAGGAGATCTTCACGTGCACGACCCCGACGCTACATGGCTCAGTGACAATGTACTGCTGTATCGAACACGAGAAGGGGACGTGGTCAAACTCAACATCGAAACACAGGAGAGGGTCATTTTGGTGGAGAACAGGAAGTTTGAAATGTTCAAAGCCACCAAGTACCACATATCTCCAGACCTGGAACATGTGTTGTTGGCCTACAACGTGGCTCCAGTCTACCAGCACTCCTACATGGCCTTCTACATCATCTGTAGTCTCATCACCCCGGAGACATGGAGTCTGAATCCTCCTGAGGTACGGAATGCCCCGCTGCAGTATGCTGGATGGGGACCTAAGGGCCAACAGCTGATCTTTATCTTTGAGAACAACATCTACTACAGAGCAACGGTGGAGAGCAGGACCATTCGCCTGGTGTccacagggaaggagggagtcaTCTTCAACGGCCTGAGTGACTGGCTGTATGAGGAGGAGATCCTTCAGACCCACATAGCCCATTGGTGGTCTCCAGATGGTCTCAGACTGTCCTACGCCACCATCAACGACACCCTGGTGCCCAAGATGGAGGTCCCTATTTTCACTGGCGCCCCGTATCCAATAGGGCTGGAGTACCATTACCCCAAGGCTGGGGAGGAGAACCCTGTAGTACACCTGTCTGTAGTGAGTTTGAACGGCCCCCTTCACACGGTGGAGATGAAGAAACCTGACGACCCCAGGATAGGAATGGAATATTACATCACAATGGTTATGTGGGCCACCACCACCAAGCTGGCAGTCAACTGGTTGAACAGAGCCCAGAACAACTCCATATTGACACTGTGTGAGGCCACCACAGGAGTCTGCACTAAGAAACATGAGGATGAAAGTGATAGCTGGCTACACAAACAGAACGAAGCGCCACTCTTCTCCCATGATGGATACAAGTTCTTCTTTACCAGAGCTATACCTCAGGGTGGGAGGGGCAAGTTCTTCCATATCTCCATGTCAACCTCCCAGCCCAACACCAGCACAGACACGCTGCAGTCCCTGACATCAGGAGACTGGGACGTTACTCAGATACTAGCTTACAGCCAAGACAAGCAGCTCATATACTTTTTGAGCACAGAGGATGATCCAAAACGACGACACCTCTACAGTGCGGACACTAAAGGCCCGTTCAACCGCCGCTGTCTGTCATGTGAGTTCAAGTGTGGCTATGTGGAGGGCTCCTTCAGCCACAACATTCAGTACTTCCTGCTTAACTGTAAAGGCCCCGATGTACCCAGTGTTGCCATCTACAGCAcaaaagacagacagaAGGTCCTGGACCTGGAGACTAACGAGGGAGTGAATAACACGTACCACAGCATGCAGATGCCCAAAGTGGAGTACGAGACCATCACCATAGACGATTACACTCTGACGATGCAGATTCTGAAGCCAGCTGGTTTCATAGACACAGCTCACTACCCCCTCCTGCTACTAGTGGACGGAACGCCTGGCGGACAGATGGTGACAGAGCAGTTCCGTGTGGACTGGGCCACGGTGCTGGTGAGCAGTTATAGCACCATTGTGATCCGCTTTGACGGCCACGGGTCCGGGTTCCAGGGCACCAACCTCCTCCACCGCATCAGGAGGAAACTGGGCGTGATCGAGGAGAGGGACCAGATGGAGGCCCTCAGGTTTATGGAGGATATTTAGCCACCCTGCTTTTAAGTTCTGAAGACTCCCTGCTTAAATGTGGAGCAGCCGTCTCGCCCATCACAGATTTCAAGTTATATGCTTCAGCATTTTCAGAGAGATACCTTGGATCACCAAAGACAGACTCTCGAGTATACTCGGTGGCAAGTTTAGCACACCGGGCAGCTCACCTAATGGACAGGAAGTACATGATCATCCATCCAACTGCTGATGAGAAAGTCCATTTCCAGCACTCTGCAAAATTCATCAACCATTTAATCAATGAGAAGGCAAATTACTCTCTACAGATCTACCCAGATGAGGGACACTTCCTGCATAGCGATGGCACACGGCAACACCTGAGCCAATCACTAGTTAACTTCTTTGAGGAGTGTTTCCGACTGCCAGACTTACCAAGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837915 lncRNA downstream 20704 67035362 ~ 67035667 (-) True G737897
TU837645 lncRNA downstream 119836 66936333 ~ 66936535 (-) True G737655
TU837591 lncRNA downstream 188186 66867575 ~ 66868185 (-) True G737609
TU837567 lncRNA downstream 224221 66831945 ~ 66832150 (-) True G737585
TU837564 lncRNA downstream 227880 66828263 ~ 66828491 (-) True G737582
TU838051 lncRNA upstream 56114 67232282 ~ 67232497 (-) True G738022
TU838068 lncRNA upstream 63717 67239885 ~ 67240107 (-) True G738039
TU838080 lncRNA upstream 69425 67245593 ~ 67245937 (-) True G738051
TU838462 lncRNA upstream 95763 67271931 ~ 67291670 (-) False G738397
TU838464 lncRNA upstream 114008 67290176 ~ 67291670 (-) True G738397
NM_001124314.1 mRNA downstream 254592 66798543 ~ 66801779 (-) True gs02
XM_021613410.2 mRNA downstream 373424 66672460 ~ 66682947 (-) True elovl1a
XM_021613411.2 mRNA downstream 373431 66672460 ~ 66682940 (-) False elovl1a
XM_021613412.2 mRNA downstream 373431 66672460 ~ 66682940 (-) False elovl1a
XM_021613409.2 mRNA downstream 397555 66649863 ~ 66658816 (-) True LOC110530394
XM_021613428.2 mRNA upstream 301824 67477992 ~ 67528795 (-) False LOC110530404
XM_036986041.1 mRNA upstream 338908 67515076 ~ 67528795 (-) True LOC110530404
XM_036986042.1 mRNA upstream 353637 67529805 ~ 67537441 (-) True kdsr
XM_021613430.2 mRNA upstream 361584 67537752 ~ 67562514 (-) False LOC110530405
XM_021613429.2 mRNA upstream 361584 67537752 ~ 67570811 (-) True LOC110530405
TU837387 other downstream 341875 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 495854 66559196 ~ 66560517 (-) True G737449
TU836773 other downstream 846380 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 954744 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 1527788 65518167 ~ 65528583 (-) True G736216
TU838543 other upstream 205052 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 244571 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 247695 67423863 ~ 67425339 (-) False G738504
TU840819 other upstream 1974175 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 2232800 69408968 ~ 69430653 (-) False G740718

Expression Profile