RNA id: XM_021613428.2


Basic Information

Item Value
RNA id XM_021613428.2
length 4925
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110530404
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67477992 ~ 67528795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTCAACCAACCCACAGTGTGTAGCTGGAACACAGACAGCAATATTATTGTGGGATACAGTCTTCACTGCAGTCCCTCGAAACGTCTCTCCGTACGTGTAACAATATTCTGGATGCATGCGACGTTGATCTTCTTATGTGGTTTTTCggtcatgtatttttttttttggtagtgTAGACTACATTATGTGCACATCGAGAATATTTTAATCTCTTCCGTATTTCTGGCTGTCTGGATTTGGGAGTCTACAGATAACTGTAGCCACTTTTTGATCAAGGCTTCGAATATTTCCTTTTGATAGCACAATTGGGGAAACATTTTGATATTCTTACGTGGATATACTTGGACTTTTTCACGGTTTCAGCCTAGTTGGGTGAAGGGACCGTTTTTCAATCCACGCACATCGCTCCCGTTGCAGTGTTTCGTTCTGCACGGTTCGATAGTATCCTATAAACTTGACCAGAGCATTTTCTCAGAAATACACTTTTCGTCTGATCTGATGTATTGCGCGGCGCAGTGCATGTTGATAAGTACGATGTATTATTCTTAAAAACTAGGATTGTGGAGGTCATTATCAGTGCCAATCATAATGGCAAACGACGACAACCGCTGTATAGTGGAAAAGTACATTTGTCACAAACTCTTGAAAATTGGATATGCGTGGGATTTCGAGAATGCAGAGGAAGATGCTGATAATAATGGGTCGATGATTTCTCCTCCGCCTGGTTTGGCACGGCGGTGCCACGGGGCCAATAACGCCAGACCGGGCAGCGTCCCCCATCTTCCCAAACGGCTCTCCCAAACGGACCCGCATGCAGCTATTCACAGAGTTTTGCGTGAGGCCGGGGACGAACTCGAACGACTGTACCAGCCCGACTTTGCGGAGATGTCACACCAATTGTATCTCACGTCTTCTATGGCAGAAAGGAGATTCAGAGAGGTGATAGACGAGCTGTTCAGGGACGGGGTTAACTGGGGACGAATTGTCGCCTTCTTCGAGTTCGGTGGCACAATATGTGTGGAATGCGTGAACAAGGAAATGACGTCGCAGGTTGACCACATCGCTGGGTGGATGACGGAGTATCTAAATGGACCGCTGCACAACTGGATTCAAGAGAACGGGGGATGGGAGGCCTTTGTTGAGCTctatgacagacagagggactcCGTGTTCTGTTCATGGCCGTCCATCAAGACTGTCTTTGGCCTGGCTGCACTGGGGGCCGCAAGCCTTACCATCGGAGCTTACCTTACACAGAAGTGAAGgagtccccccccctcccctctctttctttttgtcctccctccctcctgctctcactcctttctcttttcAAAGGCCCCCTCCAAGATCCCCAACCTGCATGTCTTCAAAGCTTCTCTCCCCGTTCTCGGAAAAAACTCCCTATTCCTCACCCCTCACTTAAAAAAACAGACACAAATCAAACAACAGCAGGAAACGGAGTCACTGCCCACACAGAAGAAAATATGTCATGAAAGTCGTGCCATTTAACTGTAATCACAAAAAGTTTGGCTTGAAAAGAGACGAGAGGAAGGGAGGGTTGGTGTCGTTTTTGTTCTGCCTGCTTGAGTACTAGTTGTAGCATGAAACCTTTGTGTGCTCATGTAGACTTGTGTAGCATGTGTCGGTGAGGCAAAAGAAAGCATAGACACTCTTAGAAGaagggttccaaaatggttcctcggctgtccccataggagaaccctttttggtttcaggtagaactgtttggtgttccatgtagaaccctctgtggaaaggattctacatggaacccaaaagggttctacctggaaccaaaaatgtttttTCAAAAGGTTCCGCTATGGGGACTCCCTTCAACCCGCCTTCAAAGGACTTCCTCCACACAACAGCTGCTCTGAATGTATAATGGAAGGAGCTCGCTACTAACCAGCACGGTGTGTCTGTCCACCCACCGCTTCTATACTGCAATATACCAGGATACCAGGAGCATCACTGAACTCTGAACACAGAACAGTTAGTTACACACACCAGCTCTGACAACACGTCTTCTAGGCGCCACAGACGCAACTTGCTCTGCCTCTCTTAGAGAGATATGTAAGGACAATGCAGTAGAGTACATTTTTTTGCATTTGACCCATATGAAATGTAATAAGAGAAAGATCGAGGGGGGTATtaaagagagaatagagggaggtattgaagagagaatagagggaggtattaaagagaggatagagggaggtattaaagagagaatagagggaggtattgaagagagaatagagggaggtattaaagagaggatagagggaggtattaaagagaggatagagggaggtatTGAAGAGAGGCTAGAGGGAGGTATTGaaaagaggagaaagggaggtattgaagagaggatagagggaggtatTAAAGAGAGGATAAAGGGAGGTAttgaagagaggatagagggaggtattgaaaagaggatagagggaggtattgaaaagaggagagagggaggtattgAAGGCGTGAACAGCAGGTTGGTTAGAGCTTTTGGCAGCCCAAACCCCTGTTTGATCAATGTTTCTGACAGAAAGTGAAAAATATTATTCCACCTAGCTGGATTTCTGGCTTAGTCGAGATCAGAGGGGGAtcgagggatagaggtagatacagagaaagagaatgtgtgagagacaaaaagagggagagaaagtcaTAGAATGAGCAGAAATGTGGATACAGACAAAAAGAGATAAAGGTGTTAGGGTCAAACATAAGATGTGGATTCATTCCAAAGGTTCAGTGACAGTGAGCCTCCCTCTCCAGTTGCTAGAGGCGCCTCTACAGCCTGTTCTAAGATGTCTCACTTGGAGGAAGAACTGTGTCCCTGAATGGCCTGGCGTGGTTCTGTTTGGCCTCACGTCACTCCCTCCCCGTCAGATGTCTCTGAAATGCATTTCTTGTACTCTCACTGCCTCTTTTTATtactatctctcgctctctctctctctctctctctctctctctctctctctctctctctctctccctctctctctctctcctgccccctcCCCTCTGCCCATATGTATGACCAGAACTCAAGGTCTCACCCACCCAGACCAAGCCACCGCTGAAAGGGGACTGAACCAAACTGCCAAATCTCCCAGAACATGTCCTCCAGCTGCCGCTGGGCTCTGATCTAGGGGACAAAAAGGCCCCACATACCCCCCAACGGCCTACGCTAATGGTTGATCCCACATCTAGGAGGACCTCCGAACGTGCACCTCTCTCAGTTTCACAAACCGTAGCAGACTCCAACATGGGATACCCAACAAGAAAAATCCCTATTGGACACAAAGACTCTCTATTGTTTTGAAGTGACGTCCATTGTATTCCCAGTAACTGATATATTTGAGCCCCCTTGCTCCGAGTCTGTCGCTGCAATGGCACAGATCACAACATCTCTTTAGAGTAAACAATCATTTCCCAGAATACTTTAGGTGTTTGTCTAGTGTTGGAGATGACATAACCTTCTTGGAAAGGCTTACTATCCATAATATTTACTATTttgctctctctttcacacacacacacacacacacacacgtttatgtAGATAAGTATGTGTCGAGAAAATGTTGTTAACTCATCGCAATGATTTCTCTCACCAAaaatctctctctttgtctcggtCTTCTTTTATCAACGCAAAACACATGTCGTCTGAAGTTTTCATAGAATGAGTATTCACTATGTATacccatatttatgttagatGTTACACATACCAACTTATGATTTGTATTTATTGAGAGGTACCAGAACACAGATATTTAAATCATAGATGAGATGAAAAGTTAAGATCATGGAGACACTCAAATGTCTTGAGAAATCGTATCTTTCGTTTTATTCAAGGAACCACATTGTAACAATACACTATTTGGGGCTGCTATTGTATCAACAGTAGAGTAACATTTCTGTGTAAGACGTGTTAATATTGGTTTAACACTGCTGTACTGTATTAGTCCTGATTTCACTTAACTCACAGCTTCAAACTGCCACACAGATACAGTATTGTTATAGAAAGCTGTAAACCAAAGTGAACCTGTAAGTAACATTGTGTAGCATGAAGAGATAAACACATGCCAATTCACTTTCACTTCTTTTAAATATTGTCGGAGTGAGATTTTGCAGGAAAGGTTGTTGTAAAGACAATGtctggcaacctattccctttatagtgcactacttttgaccagggaccaaaGGACTCCatagtaaagtagtgcactatgtcaggaataggatgctatttgggagACAGTAAATATTAGCCTGCTTGGTGTTGTTCATAACATTTCAGTAGATACCGTAGCACCCGAATGCATCCATCTGGACATGTGTTAACCGGTGCTTGATTGATATACATGTATGTGTGGTAATTGTTAACATAGTAATGAATTCCTTCTCAAGCTTATGTAGTGACAGAAAAGTCTCCACGTCTTGCTAGATTCTATCATCATAACCAAGGGCACCATTCCTTTTCTATTTTAACAGAGGTCAATCCCCCTACTCATGATAAACCCTCCAGTGATATGTTCATATGAAAACAGAAATTAGTATGACATTTTTTTCAGGAGTTTAAacacaagataaaaaaaaaagtcacTAACTGACTTGTTCATAAATAAAATGTGTAAAGGTTTGTATGTGAGGAGGAGTCATTCTCATATTCCCTTCTGGGATTCTGTTTAAATGGGTGGAGCCTACATCACACCATGGTTATAGAGTTGTAAATATAATCCTCAACCTGTGGCACTTAAGAGGTCAAATCAAATGTGTTACCATTGTTTATGCTATGTATGTATCACAATAAGCTAGATGGGATCATGCTGTTCCCAATAAAGCACATCTTTCCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838585 lncRNA downstream 47955 67429509 ~ 67430037 (-) True G738507
TU838584 lncRNA downstream 48073 67429266 ~ 67429919 (-) False G738507
TU838586 lncRNA downstream 49014 67428224 ~ 67428978 (-) True G738508
TU838583 lncRNA downstream 50670 67426966 ~ 67427322 (-) True G738506
TU838579 lncRNA downstream 52653 67424818 ~ 67425339 (-) True G738504
TU838688 lncRNA upstream 47525 67576320 ~ 67576541 (-) True G738587
TU838720 lncRNA upstream 144217 67673012 ~ 67673616 (-) True G738616
TU838777 lncRNA upstream 154438 67683233 ~ 67683955 (-) True G738670
TU838717 lncRNA upstream 163365 67692160 ~ 67693632 (-) True G738613
TU838902 lncRNA upstream 334758 67863553 ~ 67863902 (-) True G738782
XR_005052935.1 mRNA downstream 301824 67056371 ~ 67176168 (-) True LOC110530968
XM_036986027.1 mRNA downstream 301842 67055158 ~ 67176150 (-) False LOC110530968
XM_036986028.1 mRNA downstream 351981 67055158 ~ 67126011 (-) False LOC110530968
NM_001124314.1 mRNA downstream 676213 66798543 ~ 66801779 (-) True gs02
XM_021613410.2 mRNA downstream 795045 66672460 ~ 66682947 (-) True elovl1a
XM_036986042.1 mRNA upstream 1010 67529805 ~ 67537441 (-) True kdsr
XM_021613430.2 mRNA upstream 8957 67537752 ~ 67562514 (-) False LOC110530405
XM_021613429.2 mRNA upstream 8957 67537752 ~ 67570811 (-) True LOC110530405
XM_036986051.1 mRNA upstream 240954 67769749 ~ 67788194 (-) False LOC110530412
XM_036986050.1 mRNA upstream 240954 67769749 ~ 67818199 (-) True LOC110530412
TU838580 other downstream 52653 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 56936 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 96015 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 763496 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 917475 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 1621548 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1880173 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 2196979 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 2196979 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 2253494 69782289 ~ 69783294 (-) True G741177

Expression Profile