RNA id: XM_021613429.2


Basic Information

Item Value
RNA id XM_021613429.2
length 3608
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110530405
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67537752 ~ 67570811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatGTAACAATTTTATCATCATGAATGACTCACAGGCAGGCGGATTCTCATGCCTTGTTCAAAACAACTAGAAACTCTCAAATCGTCGACTTCCGtcttcagtgcattcaagacaactttTAACttgggaaaaaagtatttgaacggtaaatccaacttggaattccaagtcagaaactttggcatctttctagagctccgacgcACTAAAGTCGCATATCGGAGGATTCCGAGTTCCGAGTAGTTTTGAACGCGTTATGATCATCATTATGATCATTATTTTCTACAGGCAAGTCTCTGACGCGTGTGTGCTGTGAGATAAGCAACAAGGAAATAGCTGTGTAAACGAAACAGTAATATCAAGGCAAGGGGCTCAGACTGTGTTGGTTCTCAGGAGCAACTGACCGTATGAAACTTCCCATGGAGCCAACAAATCTACAGAAAGCTATCGCTGTAGCACAGAAAGCCTCCCAAGAGGACCAGGCTGGGAACTACCAGGAGGCTATCAAATCTTACCAACATGCTGTCAAGTACTTCCTGCACAttgtaaaatgtCAACCACAGGGTAAAGAGGGCAACCAGAAGATCAGGGACAAGTGCAAACTGTACCTGGACAGAGTGGAAGAACTACAGGAGTATCTAGAAAAGAAAGAGGTTGGATCCCAACCAACAATAAACCCCACTGAAGAAGAATACAAGAAAGCCATAGATCTGGCCAGCAAGGCAGCCCAGGAGGATAAAGCTCAGAACTACGACGAGGCCCTGCGTCTATACCAACACGCTGTTCAGTACTTCCTACACGTAGTAAAATATGAAGCCCAGGGTGACAAAGCCAAACAGAGCATCAGGGCCAAGTGTGCTGAGTACCTTGACAGAGCAGAGAAGCTCAAAGATTATCTGAAGAAGAAAGAGAAGGCTCCACCCGCCAAGCCTGTGAAGGAGTCCCAAGCTGACgacaaaggAAATGAGAGCGATGAAGGAGACGACCCAGAGAAAAAGAAGTTCCAAAACCAACTTTCAGGCGCCATCGTTATGGAAAAGCCAAACATCAAGTGGAATGATGTTGCCGGTTTAGAGGGAGCCAAAGAGGCACTGAAAGAAGCTGTTATTTTGCCAATTAAATTCCCACATCTTTTCACAGgtaaaAGAACGCCATGGAGGGGGATCCTGCTCTTTGGTCCTCCTGGTACAGGAAAGTCCTATCTGGCTAAAGCTGTGGCCACAGAGGCCAACAACTCCACCTttttctctatctcctcctctgacctgGTGTCCAAGTGGCTGGGAGAGAGTGAAAAgttAGTAAAGAACTTGTTCAGTCTTGCACGGGAGCACAAACCCTCCATCATCTTCATAGATGAGATAGACTCACTGTGCGGCTCCAGGAGTGAGAACGAGAGTGAGGCAGCTCGCCGCATCAAGACAGAGTTTCTGGTTCAGATGCAGGGAGTGGGGAATGACAACGATGGGGTACTGGTATTAGGGGCCACCAACATCCCTTGGACATTGGACTCAGCCATCAGAAGACGGTTTGAGAAGAGGATCTACATCCCCCTGCCAGAGGAACACGCCCGCACCTTCATGTTCAAGCTCCACCTAGGCACCACCCCCACCAGCCTCAACGACTCTGACTTTGTCACCCTGGGAAAGAAGACAGACGGGTACTCGGGGGCCGACATCAGCGTCATTGTCAGAGATGCGCTTATGCAGCCCGTCAGGAAAGTTCAGTCAGCCACTCACTTCAAACGGGTACGAGGGCCATTGAGAGACAACCCCAAAATCCTGGTAGATGACTTTTTGACCCCGTGCTCCCCGGGAGACCCGAACGGCGTCGAGATGACATGGATGGAGGTCCCTGGGGAAAAGCTGTGTGAGCCAGTCGTTTGTATGTCTGACATGCTGAGGTCCCTGTCCAGCACGAAGCCAACTGTCAACGATCATGATTTGGACAAACTGAGAAAATTCACAGATGACTTTGGACAGGAGGGCTAAACgtggcttctttttttttttaccaaaacaaATATTATGATTGTATCAAAGTGTTCATTCTCCCCTTCATGCTCTGTTGGCTCATCAGAAGTGTGCCACATGACTGCTCTACTCATAGAATTACTAGAACCGATATCCCCATTTAAGTCAATTTCTATGGCTCTACTGAGCTTGACTATTGGCCACATAAGGGGTTAAACAAAGGTGGATATTTTCTTAGATGCCCCCCATGTCCAAAGAATTACGGATCACTTCACTGCTGCAAGATGTCTGAGGTAGACCTGATTGGTGGATGGAACGCTGCATGGAAATTAAGAACCTTGGTGTTACATAGGCATAAGTTCTGTGGAATCTCTTTAGCAGCATCTTAGCCCGAATCCTAACTTGAGAACAATGCTCAACTCAAACATTTGCATATGTCATGCTTTGAAGTCAATGGGAGTTTGATTCGAGTTACCGTTACAAGCTTGTTAACCAAATTAAGATGCTGCTTATTGTGCAGAGTGCTTATCTAACTTCCCCAATAAATATCTAAGCTCAGTTTTCAAGTACCACTTGCCATCAATCAAATTGCACCTCACTTGTCATTGTAATCACCCATATACTCTACTTATTTTTGTACACAAGAGAGAACTCATTTTATAGTAGATACTTTATGGAGATGTATGGCTCTTTGGTCTGGAGAGAATGAAACTTACAATGCATGCCATTTGTACTTTCAAAGGCCTTTGTAGTCTCAAGGTTTGGGTAGCTGAAGCACTGCAAATGTATGTCATTCTACATGCACAAGATATTTGTGGGGCTTCGGCTAGGGTTAAAAGAACTACCGACAACAATCGGGGTGGAAACTACTTTGGGACATATTGTGTATATGTACTTTTTTTTCTCAAGAAGGCTACTCTGTGGTTTGTTCATTGTCATTCTGATTAAACTGTCAGGATCACCAAAAGTACTGGACCAGACACCTTATAGACTAGGATTCAGTACTTTTCCCCCTGACCATCCACACCATCCACATTTCCCTGTTACATATTGCTTATCTTCCCAACATGAACTACTGAAAAGCGATGCCTTATGGAGATCCAGTCACACTGTCTAACAGTGCTGAAGAAACAATGGGGCTGATACTTTTGTGAATGGAATTGTAGAGGTAACCTGAAATTGACATTTTAGGCACATAACAGCGTCATGTCCTTTTTTGTTATGGCATTGGTGGAATGCAGCTCGCTTGAACTTACAGTACTACATTTTAAGACGTGGCAATGCGCACCATGTGCCTTCTGAAACAAGTTTAGGTAGTAAGAACATATACATTGTTATTTTGTTTGGTTCATTTAAAAATGTGGAAGTTGATATCCAGAGGCACAGCTATATTGTGTTTTGTCATCGTTGTATTGAAATGTAATATATTTGCACATTTCATGTAAACTCTTATCTAATAGAGATTGTATTCCGAAGACGAATCTTTCAAAGTGTTGGACATCTTTTGTGTTATCTTTTTAACTCACTATAAAAGTGTAGAgaatgatacagtatatatcagtGAGTGGAAAAGTCAATGTATATGGTTTTCTTTCCCATGCATATGTAAATAAAAGTAATATTGAGAACTTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838663 lncRNA downstream 43231 67494015 ~ 67494521 (-) True G738562
TU838585 lncRNA downstream 107715 67429509 ~ 67430037 (-) True G738507
TU838584 lncRNA downstream 107833 67429266 ~ 67429919 (-) False G738507
TU838586 lncRNA downstream 108774 67428224 ~ 67428978 (-) True G738508
TU838583 lncRNA downstream 110430 67426966 ~ 67427322 (-) True G738506
TU838688 lncRNA upstream 5509 67576320 ~ 67576541 (-) True G738587
TU838720 lncRNA upstream 102201 67673012 ~ 67673616 (-) True G738616
TU838777 lncRNA upstream 112422 67683233 ~ 67683955 (-) True G738670
TU838717 lncRNA upstream 121349 67692160 ~ 67693632 (-) True G738613
TU838902 lncRNA upstream 292742 67863553 ~ 67863902 (-) True G738782
XM_036986042.1 mRNA downstream 311 67529805 ~ 67537441 (-) True kdsr
XM_021613428.2 mRNA downstream 8957 67477992 ~ 67528795 (-) False LOC110530404
XM_036986041.1 mRNA downstream 8957 67515076 ~ 67528795 (-) True LOC110530404
XR_005052935.1 mRNA downstream 361584 67056371 ~ 67176168 (-) True LOC110530968
XM_036986027.1 mRNA downstream 361602 67055158 ~ 67176150 (-) False LOC110530968
XM_036986051.1 mRNA upstream 198938 67769749 ~ 67788194 (-) False LOC110530412
XM_036986050.1 mRNA upstream 198938 67769749 ~ 67818199 (-) True LOC110530412
XM_021613440.2 mRNA upstream 370504 67941315 ~ 68125947 (-) False LOC110530414
XM_021613441.2 mRNA upstream 370504 67941315 ~ 68125947 (-) False LOC110530414
XM_021613442.2 mRNA upstream 370504 67941315 ~ 68125947 (-) False LOC110530414
TU838580 other downstream 112413 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 116696 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 155775 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 823256 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 977235 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 1579532 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1838157 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 2154963 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 2154963 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 2211478 69782289 ~ 69783294 (-) True G741177

Expression Profile