RNA id: XM_036986050.1


Basic Information

Item Value
RNA id XM_036986050.1
length 4596
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110530412
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67769749 ~ 67818199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCACAAATTGTAACGTTGTTGCAGATTTAGTAAGTGTCAGTCTGTAATGTCAGATAGGCTACATCAATTATTGAGCAAATTGTTGTTGTCAGGTTGGATCTGGCCTGCTACTTTGGACACAAAGATGTTGTGAAGGAGTTACTCAAGGAAGTAGTTATTTTTCTGTTATGATACCTGTGCCACTATCATCTACGGGACAGCCCAGGTCCCTAAATCTGTCTACGAGGATAATGAGACCATCGCCATGCACGAGGCTGCAGAgattagagaggagaagaggaaggaagcGAAGCTTCTgggggtggacagagagggagacatctTCAGCCTGTCTCAGCTGGTCAGCATCTGATCATCCCTGGCCCTCCACTGAACCTCTCAACCTCAAGATGCGGCCTCCAGACATCCACTGTAGAGACCTGCCTACAGGGGGCAGAAGCAGTGTGTGAGAAAGATGCTCAAGTCTGGAGCCAGCCCCAGCATCAAGAATGAGCAACCAAACCGTTTTTGACCTGGCCTGCAGTGAGGAGATTAAGCAGATTCTGGTGGGCAGTCATGACAAGAGATGCTTGGATGCCCTGGAGGAGCATGTGGCCAACAGCAGCTGTCACTACCCAGAAGCAGACAGATGAGGAGGGGGATGAAGATAGATCTTGGCGACCTCACAGACTTCCTCCAGGTCAGATGAAGTCAACACCAGCGGATCCCAAATATTTCCGTTCTGGAGACCACCAAATCACTATCAAAAGCTCTTGatctaaaataaataaacactaaAACATTTTGCAGACCATCTGCACAGCGGACCACAGGTTGAAACCACTAGTCTACACGCACACACCCAGACCGGAACTCAAACCAACACAGATTCCAACTTCTTCAGGGCTAGCCAATCACAGAGTTCCATTGTTACCTTATTTTTAATATTCTACTCCAGAAAAGTGACAGTTGGTTTCAGTTAGCCCTGCTTGTGTGAACACAAGCTAAGCTAGCCCAGGCCCATTCAGTCGTATTGATGCTTACACAATTGTTTACAAGTGGGCTGTGTTCTTATTGGCTCATGCATTCATGGTGAATGGGTTAtagaagcccctccccctgctgtGACTGGCCAGTAGCTGTGTGACAAGGGAGGGTTAGTAAACTGAGGGGCTGTGTATGTGTAGAAGGgagggtttgtttgtgtgtgtgtgcacctgtccTCGCGGCCGTGCCCTTGGGACATCAGTAGAACAGAGTGGTAATCACTAGCGAGCCTGTAGCAAGGACACAGCCGAGCAAGATCCGCTTTTATGCTGAGCTCTGCACTCTGCTTGCAGATCagtgcaggcacacacactcacacacgctctTGCTTAAGGGAAACGCTAGGCATTTGGAGACGGAACTGTTGCACGTGCATATTAACACTCAAGCAGAGACACATGCTTTCACACTCGCACGCACGTACGTACGTTCACAGAGGCAGGCACAATTCTACCACCCAGCAGAGCATCCcgaggacaggaggaggaaaaGTGACAGCAGCACCCTCTATCCACTCAGATTCTGAGAAcaagcattctctctctctgaacggCTTCCTGTTTGTGGTCAGACACTCgattgaagaggaggaagaggaagaggggagagagcccCCTCTGTTCAGCAGCAGCCTCCATTGCCGTACCACCCTCAGGGAACGGCCACCGCCAGCGGAATGTCCGGGGAGGGTAACCATGGTAACCAGAAGGCCCAGTGCAATGGAGTAAAGAAGCACAGAACGTCTTTACCAGCGCCCATGTTCTCCAGGAATGATGTCAGCATCTGGAGCATCCTGAAGAAATGCATTGGCATGGAGCTGTCTAAGATAGCAATGCCAGTGATCTTAAACGAGCCCCTTAGTTTCCTGCAGCGGCTCACAGAGTACATGGAGCACACGTACCTCATCCACCAAGCGAACACCACCACAGATTCCATGGAGAGGATGAAGTGTGTTGCAGCGTTTGCTGTGTCTGCTGTAGCTTCACAGTGGGAGAGGACGGGAAAACCCttcaacccactactgggagaaACCTATGAGCTCATCAGAGAGGACCTAGGGTTCAGGTGGATGTCGGAGCAGGTTAGCCACCACCCCCCCGTCAGCGCCTTCCATGCTGAGGGCCTGCAGGAAGACTTCCTGTTCCACGGCTCCATTTACCCCAAACTCAAGTTCTGGGGCAAGAGTGTGGAGGCGGAGCCTAAAGGCATCATCAGCCTGGAGCTACCCAAACACAACGAAGCGTACACCTGGACAAACCCCACCTGTTGTGTCCACAACATCATCGTGGGCCAGTTGTGGATCGAGCAGTACGGCAATGTGGAGGTGATCAACCACAAGACCGGAGAGAGATGCAGCCTGATATTCAAACCATGTGGCCTCTTTGGCAAAGAGCTGCACAAAGTGGAGGGCTACATTCTAGATAAAAGCAAAAAGAAGCTCTGTGCCATCTACGGTAAATGGACCGAGTGCTTGTACACTGTGGACGCTGACACTTTTGATGCTCATAAGAAATCTGACAAGAAGAACTCAGAGGAGAAGAAAAGCAACATGCAGACCAGTGTAGACGAGGAGCCAGAGGAGATGCCCCTGCCTGACGGAGACACGGTCCAGGTCATCCCAGGAAGTGAGCTGATCTGGAGGATAGCCCCCCGACCAGACAACTCTGcagagttCTATGCTTTCTCCACATTTGCCATGCAGCTGAATGAGCTGGAGGAAGACATGAAGGGTGTCCTACCCCCCACAGACTGTCGACTCAGGCCTGACATCAGACACATGGAAAAAGGAGACATAGACTCGGCAAGTGCAGAGaagaagagggtagaggagaaacAAAGACTGTCCCGGAAAAATCGCTCCAAATCAACCGAGGAATGGAAAACAAGGAACCCAGCTCTTGGCCCCAGGTGGTTCCACCAGGGCACCAACCCCCACAACAAAGCTCAGGACTGGCTCTACTCCAACAGCTACTGGGACCGGAACTACTCCCTGCTGCCTGATATATACTGACCTAcaggacacacaccacacacacatctctATCTGTACACACCTTGTCTTAACTCTCTGCAATTTTTTATATTCTGACACTGGAGCTTTGGCATTTTTCTCAGAGGGTTCATTGAAGGGGGAGAAAGTTAATCCTAGTCAGGTCATGCGGTCAGGAAAAATGTGTTATGATATAGATGATGTCAACATAGGCAAGGTCAAGGGAGAGTTCTGGCTTTAATCATTTCAAAGCCTGCTCTGAACCTGCTATAGTCCTTTGCATGGGTAAGGATGATGCTGGGAATTGAATGACCGTAAAGGCAACAACCATTCAGTAGTCCCTAAACATATCTCCTATGTCTCACTCAAAGCACAATTGTGAAGCCCTCATGAGTCAATAAGCGATGGTCATTTACCAGTGTGTATAGAATTATTATAAAACTATAGGGTGTAACCTGCCAGTCATTTTAACAATGGGAGTGTTTTGAATGGAGTGGATTGAATGTGACACACCTCTTGATGTGTCTCTAGTATCTCTCACCAAAACACTTGTGAGAATTATGtccatttattttactaggcaagtcaattaagaacaaattcttattttcaatgacggcctaggggcagaacgacagatttgtcagctcggggatttgaacttgcaaccttttggttactagtccaacgctctaaccactaggctaccctgccgcccatttGAATGGGTTGTGCTCAGTTCTGTTACTTACAAATGTATCAATTTAAGGAAAATAGAGCTTTCAAATAGTGTGTGAAATAGACTTGTTCCAAGTTCCTGCAGTCCTTGCTATATGCTAACAAACTAAACAGTCATTATAACACACTGTATCACAGCTGCTCGGACCTCAGCAACTATGGCTGAGGACATAAATGTCTGTACATATTATTTGATAGAGCTCTTCTATTCTTCTGAGCTGTAATACAATGTAGTACTTGAGGAATGTAGGATACAATGAATAGAGGGGAATAGCTGTACTGTACTTAGAATTATGGCTTGCTTCCATAACACTTGAGAACTTAGTTTGACCACTTGGCTCTACATGAATATATTTTTATGTGTGCAAACGTTTCCTCTAAAGTAAAAATGTGAATCTGAGAGGTACATGTAACTGTTTTAACTACCCCTAACACACTGAATGCAAATACAGTACAAGCACAACGTTGACTATGCAAGCATTAGCTGCActacacccacagacacacagtaagcctatgtcccaaatggcaaactatttcctacatagcgcactacttttgacctgagccctattGGGGAAAAGGGCGCAATTTGGGATACACACAGCCACTGTTCAACTCACTCATCCACtgcataacattcctctccttgGTTGTGAATAGCTGCTGTTGTAACCTCGGTAAAGCGGTAGTTTAGGTTTGAttatcagtacagtagactggaCCTAGCACACCCTGTGAATGCAGTTTTAGCTAGAGGCTACTCTCACTTTGTGTTTAGCACATTACATAATCAAGGTTGTTTCTATTGTTGCTAAATAAAAGCTTCATGTTACCTTA

Function

GO: NA

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838717 lncRNA downstream 76117 67692160 ~ 67693632 (-) True G738613
TU838777 lncRNA downstream 85794 67683233 ~ 67683955 (-) True G738670
TU838720 lncRNA downstream 96133 67673012 ~ 67673616 (-) True G738616
TU838688 lncRNA downstream 193208 67576320 ~ 67576541 (-) True G738587
TU838663 lncRNA downstream 275228 67494015 ~ 67494521 (-) True G738562
TU838902 lncRNA upstream 45354 67863553 ~ 67863902 (-) True G738782
TU838903 lncRNA upstream 45834 67864033 ~ 67864350 (-) True G738783
TU839138 lncRNA upstream 56970 67875169 ~ 67875381 (-) True G738998
TU839194 lncRNA upstream 161092 67979291 ~ 67979743 (-) True G739052
TU839263 lncRNA upstream 285221 68103420 ~ 68103696 (-) True G739116
XM_021613429.2 mRNA downstream 198938 67537752 ~ 67570811 (-) True LOC110530405
XM_021613430.2 mRNA downstream 207235 67537752 ~ 67562514 (-) False LOC110530405
XM_036986042.1 mRNA downstream 232308 67529805 ~ 67537441 (-) True kdsr
XM_021613428.2 mRNA downstream 240954 67477992 ~ 67528795 (-) False LOC110530404
XM_021613440.2 mRNA upstream 123116 67941315 ~ 68125947 (-) False LOC110530414
XM_021613441.2 mRNA upstream 123116 67941315 ~ 68125947 (-) False LOC110530414
XM_021613442.2 mRNA upstream 123116 67941315 ~ 68125947 (-) False LOC110530414
XM_021613443.2 mRNA upstream 123116 67941315 ~ 68125947 (-) False LOC110530414
XM_021613444.2 mRNA upstream 123116 67941315 ~ 68125947 (-) False LOC110530414
TU838580 other downstream 344410 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 348693 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 387772 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 1055253 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 1209232 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 1332144 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1590769 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 1907575 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 1907575 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 1964090 69782289 ~ 69783294 (-) True G741177

Expression Profile