RNA id: XM_021613442.2


Basic Information

Item Value
RNA id XM_021613442.2
length 6341
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110530414
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67941315 ~ 68125947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAGGAGGGAGCTTCCATCTTCTCTCTGCTTCTTCATCCTCTTTTTAAACCAATTTAGACGTAGATTTAGATCAGATACCGAACCTAATCCATGATTAGCTAACTGGATTGGGAAAAGGAAGACTCTATAAGAGTTTTGATGCTTCTAGGTGGATATGCAGGGAAAATTGTTATTCTTTTTTTCTTTTGTTTCATTTTTGCTCTCTCACAGCAGGCGTTTTGCATATGTCTTTCTCACGCGACTGCATTTGAGATCTGAAGCTAAAAGCAAcagttcagcttttatttctaaaCGACTATTAgcctatacctacagtacacgcGAATGTGTATTGCTGGAGAATGGAAGCGCATGACGGTACCACTATATTCTGACACTTTTCCCGATACGCAGTTGAACTAAATAGAGTTGCCTACCGATTAATGGATTTTAACATTAGGTTACATCCACCTACTCATCACAAAATAATCGCAACTGATATTCAGAccatatacatttttttgtaatgGTAAAATAACACTCGCTGCTATTGTCAGTGAAATTTAAAAAGGATTTCCTTAGTGAATCCAATTTACCTGTCTGAAACTGAGCAACTTCAGCGTTTTCTGTAGGATGTCGCGCCGCAAGCAAGCTAAACCAAGATCATTGAAAGAAGACAATGTGATAGAGGAGCAGCACAGTCCTGGGCAGACTGCCATTCCGAGCGACCCAGAGTGCGCCCTCGAGAGCGGACTGGAGGATGGTGAGGCTCAGGCCAGGTCCAGGCGTTTGAGGAAGAGGCTTCTCTCTCCAGAGGaaggcgaggaggaggaggaggaggaggaggccgcGCTGCACAGCTGCGACAGCTGCCAGCAGGTGTTCGAGTCGCTGAGTGATCTCACCGAACACAAGATTAATCAATGCCAGCTGACAGACGGTGTTGATCTCGATGATGACCCATCCTGTTCTTGGCCTGCATCATCTCCATCCAGTAAAGACCAGACTTCCCCTGGCCACTGCGAAGACTATGATTTTGGCGAGGATGAAGGGGGCCCTGGCCTACCGTACCCGTGCCAGTTCTGTGACAAGTCCTTTAGCCGTCTGAGCTTTCTCAAGCGCCACGAGCAGAGCCACGGTGACAAGCTCCCCTTCAGTTGCACCTTCTGCAGCCGCCTGTTCAAGCACAAGCGCAGCCGCGACCGGCATGTCAAGCTGCACACCGGCGACAAGAAATATCATTGTGGCGAATGCGACTCGGCCTTCTCACGCAGCGACCACCTCAAGATCCATATGAAGACCCACGCCTCCAACAAGCCCCACAAGTGCCCTGTGTGCCGCCGGGgcttcctctcctccagctccctccacgGACACATGCAGGTACACGAGCGGGGCAAAGACAGCAGCAGCAGGGGGTCAGGCAGTGGATTCTCCAAGGAGGAATGGAAGCTGAAGGAGACAAGGAAGTGCAGCCGCTGTGAGGAGGGCTTTGACGTCCCTGAGGAGTTGCAGAGGCACATCGCTGAGTGCCACCCTGAGTGCTCTCCATCAGAGGACGGGGGCCTGTGCGGTGCCCTGCAGTGCATCTACTGCCACGAGCCCTTCAGCGATGAGGGCATCCTGCTGACCCACATTGACCAGGCCCACAGCCATGACCGCAAAGGTCACTGCTGCGCCGTCTGCTCCGAGCACTTCCTCTCCGTGGAGGACCTCTATGCCCACATGGACAACCACCAACTCCCTGAGTCCAGTAACCACAGCAACAGCCCTTCCCTGCTCACCGTGGGCTACACCTCTGTCTCCAGCACCACCCCGGACTCCAACCTCTCCGTCGACAGCTCCACCATGGTGGAGGCCGCCCCACCTGTGCCCAAGACccgggggaggaggaagagggctgCCCAACACACCTCACATGATGTCGGGGGACGCTCCTCCAAGCAGCCCAAGATCTCCTACAGCTGCATCTACTGCAACAAGCAGGTGTTCAATAGCCTGGCCGTACTTCAGATACACCTGCGGACCATGCACCTTGACAAACCTGagcaggcacacacctgtcagttCTGCCTGGAGTTGCTGCCCTCCCTGTTCAACCTGAGTGAGCACCTAAAGCAGGTGCACAACGCCGAGGACCATGCCGCCCTGGTGGCCAGCCTGCCCGACGCCTTGCTCCAGTGTAACTTCTGCACTGAGGTGCTGAGCAACCTCAATGCTCTTCAAGAACACATCCGCTGCTCCCACAGCTTCCCCAGCCCTGTGGCTAAGGAGAGCAATGCCTTCTTCTGTCCCCAGTGCTTTATGGGGTTCCTGACCGAAGCCACGCTGGAGGAGCACGTCCGTCAGACCCACTGCGAGGCGGGCAGCCTGCGTTTCGACTCCCCCCTGGCGGTGACCCCCAAGGAGCCCGTCATGGAGGTGTACTCCTGCTCCTACTGCACCAACTCGCCAATCTTCAACAGCGTTCTGAAGCTGAACAAGCACATCAAAGAAAACCACAAGAACATTCCGCTGGCACTGAACTACATCAACAATGGAAAGAAGTCTCTGCGGACCCTCAGCCCTTCCTCACCCATATCGATTGATCAATCTTTCCTTCATGGTTCCTCCTCTCGTGGCAATCGTGGCATTAGCGAGTTCATCTGCAACCAGTGTGGGGCCAAGTACACCAGCCTGGACCTGTTCCAGACCCACCTGAAAACTCACCTGGACGGGATACAGCCCCAGCTCACCTGCCCCCAGTGCAGCAAGGACTTCCCCAACCAGGAGTCCCTGCTGAAGCATGTGACAGTCCACTTCACCATCACCTCTACCTACTACATCTGCGAGAGCTGCGACAAGCAGTTCACCTCAGTGGACGACCTGCAGAAACACCTGCTGGAAATGCATACGTTCGTGTTCTTCCGCTGCACCCTGTGCCAGGAAGTGTTTGACTCCAAGGTGTCCACTCAGCTTCACCTGGCCGTCAAGCACAGCAACGAGAAAAAGGTGTACCGCTGTACCTCATGTAACTGGGACTTCAGGCACGAGGCCGACCTGCAGCTGCATGTCAAGCACAGCCACCTGGAGAACCAGGGCCGGGCCCACCGCTGCATCTTCTGCGGGGAGTCCTTCGGCACGGAGGTGGAGCTGCAGTGCCACATCACCACCCACAGCAAGAAGTATAACTGCCGCTTCTGCAGCAAAGCCTTCCAAGCCATCGTACTTCTGGAGAAGCACCTGAGGGAGAAGCACTGTGTGTTTGAGGGAAAGGCCCAGAACTGTGGCGCCAATGGATCGACCACCGGAGGAGTGGACCACCACCCGGCGACCAAGGACGACGCAGAGCTACAGGGTCTGTTGACCAACAACCATGGTGTAGGGGTGGCAGGATCAGGGGGCGTGTTGGAGTCCCCAAACAACCATGAtgggagtgaggaggaggtggaCACCGCTGACCCCTTGTTCGGGTGCGACATCTGCGGGGCATCGTACACAATGGACTCCCTCCTCACCAACCACCAACTCCGAGACCACAACATCCGCCCGGGCGAGAGCGCCATGGCGAAGAGGAAGTCAGACATGATCAAGGGCACCCACAAGTGTAATGTTTGCCAACGCACCTTCTTCTCAGAGGCAGGTCTGAGGGAACACATGCAAACCCACCTGGGCCCCGTCAAGCACTACATGTGTCCTATCTGCGGAGAGCGTTTCCCCTCGCTGCTCACACTGACCGAGCACAAGGTCACCCACAGCAAGAGCCTAGACACAGGCAGCTGCCGAATCTGCAAGATGCCCCTGCAGAGCGAGGAGGACTTCATGGAGCACTGCCAGATGCACCCAGACCTGAGGAACTCCCTGACGGGCTTCCGCTGTGTGGTGTGCATGCAGACCGTCACCTCCACCCTGGAGCTCAAGATTCACGGCACCTTCCACATGCAGAAGACTGGCACAATATCCACCAACCACCCCATCGGCCGCACCACCAATCTGGCTTCCCacaaccaccatcatcaccaacaacaccaccaagtAAACCAGAAGCTCTTCAAGTGTGCCTCGTGCCTGAAGGAGTTCCGGTCCAAATCTGACCTGGTGAAGCTAGACATCAACGGGCTGCCGTACGGGCTGTGTGCCGCGTGTGTCAGTGCCGCTGGCTCAAAGAGCTCCAGCCCCAAGGTAATGAACGGAGGCAGGCAGCagcagggagggggaggagccACAACCCCAGCCATGCCTGCAGCAGCATGGACTGCTCATATGGAGAGTCTCAGCCCCGGGGAGGGGAAAGGCAAGCTGGCCCATTCATCGTCAtcgtcctcctcctctatctcctcaaGCGCCGCCAAGACTCGATGTACCAGCTGCAATGTGAAGTTTGAGTCAGAGGCGGAGCTGCAGAACCACGCCCAGACGGTGcacagggagcagggaggggactGCAACAGCGGGCAGCTCAGGACCCCACAGATCTCCCCCATGCCCAGGGCAAGCCCCTCACAGACTGAGGAGAAGAAGACCTACCAGTGCATCAAGTGTCAGATGGTCTTCTACAGCGAATGGGACATCCAGGTCCACGTGGCCAATCACATGCTAGGTAGGAGAGAAGAGGGCCTGAACCATGAGTGTAAGCTCTGCAGTCAGTCGTTCGACTCGCCAGCCAAACTACAATGCCACCTGATCGAGCACAGCTTCGAGGGCATGGGCGGCACCTTCAAGTGTCCTGTCTGCTTCACAGTATTTGTCCAGGCCAGCAAGCTCCAGCAACACATCTTCTCAGCCCATGGCCAGGAGGATAAGATATACGACTGCTCCCCGTGCCCACAGAAGTTCTTCTTCCAGACCGAGCTACAGAACCACACGCTGACTCAGCACAGCAGCTAACCAGGCAGATCATCACTTGGCCTGAGGAGCAGAGGAGAACCATACGGCGAGGAGGAGAATCATGTCTGACCCAGTCAGTCCTCCAACCACCGTCAGTGCAATAGCCCACTGTCTCTTTTGCACTGAACTTTGGATTCACTTCACATCAGGAAGGACCATGTCAAACAAAAAGAAAAGGACAGATGAAAGACAGAGGTGTGAAAAAAAGACAGAAAAACGTATCTCTTTGTCTGGTCGTCATGTCACCAAAACTGGACAACTATCTTTGTAAATAGAAGTACTTCTTCATGTGTTGCTTAATAACTCCAGCTAAATTGTAGtcttatacagtacagtatttgcTAATGTACAGTTCAGAACCGGTTGTCTCcaaaaaataaagagagaaaaaaagctaAACAGAGAATGCCACTGTCAACAAGAAGATGTGGAACTCATCCACAATATGTTGGCGAAACAGGGTGCCAATGTGGGGTAttattatatagggaacatgaAGTTGTGGTATGGTCAGTAAGGTCCCTTTTCATCAGCGCACATTTCCTGTATGTGACACTATCCTGACCTGGTCACTTATGACAGAAGGGTGTAGCAGGATGCTTGATCACCAGCAGAGCCTGACATGACATCACAGGTCTCATTCCAACATGGCTGCCATTCCAGTTGACCAGCTGAGGACTAAGTTGTGCATTTAATCTGGTCCGCCTGCCTAACTGCACATGGACAAGTTCAAATGagacaaagaaaaaaaaagaaaaaaatggagaaaaacaGGACAGGGTTCTGATATATGCAAAAGCAGTGACACAGATTTGAAAAGGCCAGCTAGCTACTCTGGTTGGCACGGTAACATAGACATTGTCAACCCCCCTGTGTCTCCTAGAGCATCATGGGAAATCTCCAGCCCACTGACTCAAACCTGTACGTTTCTGTTATTAATGTTTACTGCTCGTTCAAGCCTGGAGATTACTGGAAAAATTATGTCATTTTTCTTAGCTctttgtattacattttttttgcaatgGGGAATAAATCCATTTTGATTTGGGGTCGTGGGGGAGACTACATGTATTAGGTCTCTCTGGGGGATGTGCTTAAACTTATGTCCTGGGCTCTCCTTGAGAACTCCcaactcctcctctttcttccctgTTTCCTGCGGTATCCCATTGCTCTGCTCTCTGCTCAAGCTGGAAGCCAATGTGGCATTATAATACACCAATATAAATCATTCTGTTATGTAAATGTTTTTGCATTCATTGAACCTGAGATGCACTTTTGTATGAAACTTTAATGTTTTGATCTTTTGATTGAGAATTGTTCGTACTCAGTTTACAGGAAATTAACCACCATCTCCTGCTTCAGCAAAAGGACAATTATCTTGTCTGTTATTCAAATGTTATTGTACAAATATGGAGTTCTGTATTTGGCAGACCTCGTTTTTTTTTGGTGTTGCACATGTGATGGAAATATTAAAACTGTATGaaaaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU839138 lncRNA downstream 65934 67875169 ~ 67875381 (-) True G738998
TU838903 lncRNA downstream 76965 67864033 ~ 67864350 (-) True G738783
TU838902 lncRNA downstream 77413 67863553 ~ 67863902 (-) True G738782
TU838717 lncRNA downstream 247683 67692160 ~ 67693632 (-) True G738613
TU838777 lncRNA downstream 257360 67683233 ~ 67683955 (-) True G738670
TU839298 lncRNA upstream 37448 68163395 ~ 68168151 (-) True LOC110530416
TU839371 lncRNA upstream 91336 68217283 ~ 68217490 (-) True G739196
TU839382 lncRNA upstream 99987 68225934 ~ 68226142 (-) True G739207
TU839468 lncRNA upstream 154523 68280470 ~ 68280690 (-) True LOC118965617
TU840340 lncRNA upstream 310460 68436407 ~ 68436724 (-) True G740103
XM_036986050.1 mRNA downstream 123116 67769749 ~ 67818199 (-) True LOC110530412
XM_036986051.1 mRNA downstream 153121 67769749 ~ 67788194 (-) False LOC110530412
XM_021613429.2 mRNA downstream 370504 67537752 ~ 67570811 (-) True LOC110530405
XM_021613430.2 mRNA downstream 378801 67537752 ~ 67562514 (-) False LOC110530405
XM_036986042.1 mRNA downstream 403874 67529805 ~ 67537441 (-) True kdsr
XM_021613464.2 mRNA upstream 37421 68163368 ~ 68180023 (-) False LOC110530416
XM_021613462.2 mRNA upstream 37421 68163368 ~ 68180024 (-) False LOC110530416
XM_021613463.2 mRNA upstream 37421 68163368 ~ 68180024 (-) False LOC110530416
XM_021613450.2 mRNA upstream 37421 68163368 ~ 68180025 (-) False LOC110530416
XM_021613451.2 mRNA upstream 37421 68163368 ~ 68180025 (-) False LOC110530416
TU838580 other downstream 515976 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 520259 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 559338 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 1226819 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 1380798 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 1024396 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1283021 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 1599827 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 1599827 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 1656342 69782289 ~ 69783294 (-) True G741177

Expression Profile