RNA id: TU839298


Basic Information

Item Value
RNA id TU839298
length 3987
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC110530416
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68163368 ~ 68180025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGATTAAGACAAGTTGAATAATATTGGATAATATAGCAAGTCACACCAGAGCAGTGCAATGCGAGGGCAATGTAGTGTCTCCTCCCTAAACGTAACGGACTTTTGAGATTgttgaaggggaggggagagctaCGTGTTGCCCTGTATTTTCTGTGGTCCTTTGCTGGGGCCACAGCAACACTTTGATTCTTTATCTTTGAATATTCAGGGACACATGAGGAAATAAAGACCCAGGGATTTGAACCCCTGACTAGTTCTGTAAGAAGCAAAGGGTCAATATGGAAATTACCAGCAATGAGAGATGGCCATggcagtcactcagtcagtcaccaAGAGCCCtgctctgacctctaacctctgacctctgtacAACTGTTATCTGGACTTTTATAACGGCTGCAGCTCACAGagacgcccacacacacacacacacactttgccctCTGTATCCTCTATGTCTGGGCCTTATGTAATGAGATGATTGTgttcacttccatttctcctttTCTAGTCTGAGTTAAGTCTCAAAGCAGCAATGCCTTAAAACCAAACAGAGCTGCCTTATCCAGAGCACTGCAGATTTCGAAAAAGGGCAAAAAATTACCCGTAAAATTCATTTTGTCTAGATTACAGAGGACAGAACTGAACTTCACACTCTTGTAGGGCAATGTTTCTCCATCCAATAGCCCCCTGTTCATAAGAAGCAATAATGCCAATGGGAAGTGGAGGGGTGGGACGGGGATGGAGTGAGGAGATTttacaccagaaacaaaattctGTAAGGCTATGTTATATGTCAAGGTCAACATATGTGATGATGTAAACATGTATTTTATGATTTTTAGATGGAGCTAATTTTGTATAAGAATTTGGAGTACTGTTGAATATGGTTTCTGTTTTCCTCCTGAAGTGTTATGTCTCTTGATGTAAGTTGTGATTAACATTGTTTTCATctgctattttgtttgttcttttgttATTTGTAACCCCTGATTTCCCTTTGCTTCTTCAATGACTTGTACATTGAATATGTGCTTGGGGTGAACAAATCAGATGCTTTGGTTTTATGAATGGATTGTACATAGAAAGCCCTCAAACAAACTGAGAACACCTATCTGTATTGGAGCATCAGTGGTGAAACATTATTTCTTTGGGCAACAAAACATGACCTGTGAGTGGGGCTGGATTCTGACTTTGagatctacagtatgtgtgtaactagggttgcaaagctaccggtaatttaccaaagttaccggaATATTGCGTGATTTTAGTCATTAACAGAATCTATTGTAACTTTGGTAATCTAGTAATctatacttgaataacttttaAAAACTGTATTCGTATATAGTGTTCATTTATTATATCTGTgaccatattgtccatgagttttaTATTAGAtagtagggtggcaggtagcgcgttgggctagtaaccgaaaggttgctggtttgaatacctgagcagacaaggtgaaaaatctgccgactTGCCCATGAGtgaggcacttaaccctaatttgctccaggaaCGCCATGGCTGACCATGTCAAACACCACATTTCTCCGGACtaatctggtgtatgtgacatttttttatttcaccataTTTTTCAAGAGAAAATAACCTAATTAATGGCAAAAAGCATCTAATCAGCAATTACATAATTTTTTCACTAATCTAATGAtttacttttttcacaactgccaccagtttgatgCCCAAACATGAATAAAACATTGACATAAAATAAAAGTTTGTAAAAAGGaaatttcatgctgaaaccctcatattaaacaccaatgaaTGGTATTCATTtagttaatttttttatttaggaTTGTTTAACATCTTTGTCATATTTTTTTAACTCTAAAGGTTCGGTGTCCCTAAACCTGGATGGTTGttgctaatgtgactagaatgacatAAGTAACAGCCAACTTTCCAGTACATAGatatgtcttatatgggcagaaagcttaaattcttgttaatctaactgcagtccaatttacagtagctattacaatgaataaataccatgctattatttggagagtgcacaacaacaaaacacttatcatggcaactggtttgatacattcacctctgaaggtaaataatgtacttacatttagtaatcttgctctgatttgtcctcctgagggtcccagagatcaaatgtagcatagttttgtttgataaaacacatgttatattcaaatgtaggaactgggttctgtCTTGGGCCCTGCCTGGCCATCTAGATGTCTGAAGGTTAGTGGGGGTTTtttctgtagggaagctaattatccatcatgtatgacattcctgaaTGTGTTTaaacttgtatttttttattaccatagcatttttgtatgttctctatagttatgtacttgaaaatgtatcaattgaccaattcggcacatttggggaaactcctggcagacttgatacaaaatatagTCTACTAATGTaatgcttcactggatcagtctgaaactttacacacacactgctgccatctaaaTTACACCTAAACTCCTATCTGAatgtatggcctttctcttgcatttcaaagacgaTGGAACAATGATTATTTTCTGAAAACGcatgtttttgtttgtattatcttttaccagaacTTATGTGTTATTcttctacattaatttcacatttccacaaacttcaaagtgtttcctttcaactggtatcaataatatgcatatccttcctTCAGGTCCTGAGCTCCAGGCcattagatttgggtatgtcattttaggtggaaATTTTAAAAAATGGGCCGATCCTCATCTGATTAAAATATTTCAGATATTTTACATGTTATTACCCACGCAGAGGGCCAGAGATTATTAGACACTTGTCATAATCTGAATTACACAAATGGGCCACTAGATGTCTTCTGACAGATTGTAAAAAAAATCCTTGGAAGATAAAAAACAATTCTGTTAGTTTACACCCTCCCTTTGCAAACCAATGTGTATCACAAAGCACTGAGcccatattcataaagtgtctcagattAGGACAGCTGAAttgggatcagtttagccttttagataatATGTAAGAATAAATAGAtaggggagacctgatcctagatcagcactcctactctgagacgatATATTAATAGGGCCCCTGAATGCTTCCAGTACCCCCTGCTTCTCTTAAAAGTTGAATTTAGAAGCATGTATCTTATGGCCTTGGCGCTTCAGTGTGCTCTGTTATTGGTAGCTGAATAAGAGATTAATTAATTTGGGGGATATTCCAAACATATGTCTAATGTGCATCGGACACAGCTCTCTGGAGAATAGTGTCTGCTCGATACATTACGTTTTTATCAGCAACTTTCTGAACGTTTTGCCCGTGCTGAATATTCCCATAATGGGTCTGTGGGAGTGCATTGACCACAGACTGTCCGATCAGACTGTCGTACATTCAGTATGTTCAGCACCACATAAGCTTGTTTCAGACAGAATTAATCGTCTTTACAATGTTGGATGAGATTTCTCCCCCGAATAAActtttacatttttgttatttaaGAAAATGTAATGTAAgttaaccaccaacagaataatAAGAGTTATGTGGAGTATAACAAAGTGTTACGTTATACTCTAAACTGAGTGTCTTGCTGTAATGATTTGAGATACATTTCCTATGATGTCATGCAACATTTCACTCTTGTACAGACGGGTTGTGTTATTTTATGAAACCTTGGGCTTGATATACATTTGTACAATATGCATAAATCATGCACATACTATAGAGAAGATAGAAGTATGGTGATTGGTTTCCAGTCAGCCTCAAAGATACTAACCTTGGTATGCTTTAGTACATACCttgtaataaatgttttgtctttcatTTACCCTGTAGCCAACATGATGTTACTGTAAGTGTCATTGTGATGTGAAACTGTACAGTATGTCACTGAAAAACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU839263 lncRNA downstream 59699 68103420 ~ 68103696 (-) True G739116
TU839194 lncRNA downstream 183652 67979291 ~ 67979743 (-) True G739052
TU839138 lncRNA downstream 288014 67875169 ~ 67875381 (-) True G738998
TU838903 lncRNA downstream 299045 67864033 ~ 67864350 (-) True G738783
TU838902 lncRNA downstream 299493 67863553 ~ 67863902 (-) True G738782
TU839371 lncRNA upstream 49132 68217283 ~ 68217490 (-) True G739196
TU839382 lncRNA upstream 57783 68225934 ~ 68226142 (-) True G739207
TU839468 lncRNA upstream 112319 68280470 ~ 68280690 (-) True LOC118965617
TU840340 lncRNA upstream 268256 68436407 ~ 68436724 (-) True G740103
TU840613 lncRNA upstream 658983 68827134 ~ 68827610 (-) True G740369
XM_021613440.2 mRNA downstream 37448 67941315 ~ 68125947 (-) False LOC110530414
XM_021613441.2 mRNA downstream 37448 67941315 ~ 68125947 (-) False LOC110530414
XM_021613442.2 mRNA downstream 37448 67941315 ~ 68125947 (-) False LOC110530414
XM_021613443.2 mRNA downstream 37448 67941315 ~ 68125947 (-) False LOC110530414
XM_021613444.2 mRNA downstream 37448 67941315 ~ 68125947 (-) False LOC110530414
XM_021613469.2 mRNA upstream 88782 68256933 ~ 68267516 (-) False LOC110530419
XM_021613472.2 mRNA upstream 88782 68256933 ~ 68269122 (-) False LOC110530419
XM_021613473.2 mRNA upstream 88782 68256933 ~ 68269456 (-) False LOC110530419
XM_021613471.2 mRNA upstream 88782 68256933 ~ 68269841 (-) False LOC110530419
XM_036986054.1 mRNA upstream 88782 68256933 ~ 68269841 (-) False LOC110530419
TU838580 other downstream 738056 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 742339 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 781418 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 1448899 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 1602878 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 982192 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1240817 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 1557623 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 1557623 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 1614138 69782289 ~ 69783294 (-) True G741177

Expression Profile