RNA id: XM_021613472.2


Basic Information

Item Value
RNA id XM_021613472.2
length 2631
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110530419
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68256933 ~ 68269843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCGATGAGCACCATAGTTCTAACAAAAAATATTTAACCACTTCCTGGATATTGTTCGGTGTTTAACAACTGTATGTTTGTTAAAGTGCCGACGACTGGCTTCaaatgtttatttgtattttcacCGAATTGTACGACCTTCGTTGAGCAAACACCGTAGCTATCCGCCCGTGTGAATTCGCTCCTGGCGCATTCGCCTACTTCAGCCCCAAACACATTATCGTCTCCGTTTTCCCCGTCGGACTACTTGTCACACTCTTATTACGAATCGAGTTCAGCATTTCGATACAGGCTTTTCCTATATTCGTTTGTCCTAAACCAGTTTCATTTCCTGAGTGCCCCAGATCTGGCTAATGAAAGACGCCATTGTGGAGTAATTTTGCCGGAGGGGATTTCTTATTTTATCTCTTGCGGGGCTGACCTATACCCGTGCGCAGGGAATTCCACGGTACAGACGCGCCACTGCAAATAATTAAACTCCCGGGCGGAAGTCTGGATCTATGTTTGCATCTTTGTAGCTGTGATGTTATGGAGACAAAACATGATATATATGGATAACCGTTCCAGCATGTCCAGGCCCATGATCACCAGATCACCAGCATCCCCCTTGAGTAACCAGGGCATCCCGACGGCTGCCCAGCTCACCAAGtccaatgcccctgtgcacattGACGTGGGCGGACACATGTACACCAGCAGTCTGGCCACGTTAACCAAGTACCCAGAATCCAGaaTTGGACGTCTCTTCGATGGCACAGAGCCCATAGTGTTGGACAGTCTGAAGCAGCACTACTTCATAGACAGGGATGGACACATGTTCCGCTACATCCTCAACTTCCTCAGGATCTCGAAGCTCCTCATCCCAGATGACTTCAAAGACTACAGCCTGCTGTACGAGGAGGCCCGGTACTTCCAGCTGCAGCCCATGCTGGCCGAGCTGGAGCGATGGCGCCAGGACCGTGACCTGGCCCGGGTGTCACGCCCTTGCGAGTGCCTGGTGGTACGCGTGGCACCCGACCTGGGAGAGAGGATCACGCTGAGCGGAGACAAAGCCCTCATCGAGGACGTGTTCCCAGAGATTGGCGACGTCATGTGCAACTCTGTCAACGCCGGCTGGAACCACGACTCCACACATGTAATCCGCTTCCCGCTCAATGGATACTGCCACCTCAACTCCGTCCAGGTCTTGGAGCGTCTGCAGCAGCGTGGCTTTGAGATCGCCGGATCCTGCGGTGGGGGCGTGGACTCATCCCAGTTCAGCGAGTACGTCCTGAGGAGGGAACTGAGGAGGGCAGGCCAGCGAGGAGGGCCTAACTCAAACCGTATAAAACAGGAGCAGCTGGACTAGACCTCCCAGACACCTGGGGTGCTAGACTTTTTTTCGGTGGCAGCCAAGCACTAGATGGGACGCAGCAGAGCTCTGTGGATTCTGGGTATAATGCTGCGCTCATGTGCTAATTTGTACTAGGAAACTCTGAAATGTACTACTTGCTAACTGGTTTAACGTGGCACGTGTATAATTACAACCACTTTGCATGTCGGAAATGTCTGAGTTTCCTAGCTCCGACTAGCACGTGAATGccgctttattgttttgtttgtcatTAAACTTTGTTTTTACTTGAGAAGAACCACAGAGAAAGAGTGACCAAGGTGCGacaggagttttttttttttttttttgccataagAAGATACAGAACATTTTGATAAGTTGATATCTCAAGGATATTTGTGATTGTTCATGCCCCGCCCCCATCAAAATATATAAAAAAGGATTAATACTTTCCCAGGGTCCCCAAATAAAGTTTGTTTTAAAACTTTGAACCTACATTAGGTTAGATATGATTTCCATGATTAAGACCATACAACATGTAAATGGTTTGATTGCACATGTAGTGCACGGCGGCCATTCACTAGTGATTTGCAGTTTTTATTTACCCATTGGCATATTTACCAAGTCGAATTGTTCTCCCATACTATAAGAACGTTCACTGTGTTGCTAGCGGCAGACAAACAGTGCTATACATCATGGTGTTGTGAGAAGATCTTGGTTAGCATAAACACCATTCTTTTTAACATAACTGAATGAAACATTATCCACACTCTTATTCACACAGGATgttaagtatcgtgataatacaAATGAAGTGTTTTTACTTTAATCAAAGTTACCTTATTGGATTTTATAATATGAAATATAGTTCACATTAGTATTATCAATATTTTATGTCATAGACCATTCTATACTCACTAAATGAAAATTAAGTAAATTATAAATGTCCCTGCATTGCCTCTATTTTGGGTACTAAACCCAGAGAACAGAGGTGACTAATTCAGAGGAGCCTCAAGTTCCTATTGAGTGACCTACTGTAAATGATATTTGCCattgtatgttttgtttttatACATTGAAATGGACACCTTTTTAACCGGCATAATGTTGCCTCATAAATGACTGAACAGATCAGGCTAATAGTAGAAGACCCAAATCTTAAGATTTATTCTTAGGACATTGATGATGTGAAGTTTGATTATCATAAACTATTTCTAACGTGATCTACCTACGCTCCCTAGATTTGAGTAAAGAGGAATGTAGTACTAAAATGTGAAATAAATCTTCAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU839382 lncRNA downstream 30791 68225934 ~ 68226142 (-) True G739207
TU839371 lncRNA downstream 39443 68217283 ~ 68217490 (-) True G739196
TU839298 lncRNA downstream 88782 68163395 ~ 68168151 (-) True LOC110530416
TU839263 lncRNA downstream 153237 68103420 ~ 68103696 (-) True G739116
TU839194 lncRNA downstream 277190 67979291 ~ 67979743 (-) True G739052
TU839468 lncRNA upstream 11348 68280470 ~ 68280690 (-) True LOC118965617
TU840340 lncRNA upstream 167285 68436407 ~ 68436724 (-) True G740103
TU840613 lncRNA upstream 558012 68827134 ~ 68827610 (-) True G740369
TU840616 lncRNA upstream 560144 68829266 ~ 68829505 (-) True G740372
TU840633 lncRNA upstream 589217 68858339 ~ 68858755 (-) True G740389
XM_021613457.2 mRNA downstream 76908 68163368 ~ 68180025 (-) False LOC110530416
XR_005053025.1 mRNA upstream 11354 68280476 ~ 68283072 (-) False LOC118965617
XM_021613476.2 mRNA upstream 34619 68303741 ~ 68310975 (-) False LOC110530421
XM_021613475.2 mRNA upstream 34619 68303741 ~ 68311037 (-) True LOC110530421
XM_021613477.2 mRNA upstream 273136 68542258 ~ 68646746 (-) True LOC110530422
XM_021613480.2 mRNA upstream 565218 68834340 ~ 68856032 (-) False LOC110530423
TU838580 other downstream 831594 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 835877 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 874956 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 1542437 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 1696416 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 881221 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1139846 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 1456652 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 1456652 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 1513167 69782289 ~ 69783294 (-) True G741177

Expression Profile