RNA id: XM_021613480.2


Basic Information

Item Value
RNA id XM_021613480.2
length 3620
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110530423
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68834340 ~ 68856034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAGAGGGTGGAGTACTAGACGAGGAATGCGTCCCGTCGTCGAGGTAGCCAATTGAGTAATCGCGGGCGGGGTACTTTTTCATAAACGAAACCGTCATTCCGATACCTGCAATGGAAGACTCATACGGACACAATTAGGTTACTGTTGATTGGTGTAAGGATATTCCACCCACTAATCCTCGCCCTTGACAGAAACACTTATACTTCTTGTTCCTGCGTGTGGTTTCGTCACTATAGTCTTGATGTTTCGAATGGTAGTAACAAAAATGGCACGGAACTTAAATGTCAATTTATGCATCTTTTTGATCATCTCATGTGTGGACTCCTGCTTTATCCCCGACTCCATACAAGCAGCAGTACCTCAGACAGTACCAGTTGGGCATGTTATTTCAAAAGTTGATGTCGACAACTGTGACACCAAGACCTTGCATTTGACCTCTTGTGACCCGGACTTCACAGTACAGGCAGATGGAACTATAGTAACAGTCCACATCACTATGGTACCAGCCAATGGCAGGACATTCTCAGTGCAGTTTCAGGACCCCAATGGTCAGAAGAAAAACATGGATGTTTACCTTGTCCAGAACTCTAGAAAAGTATTGAAAGATGGTCTACTAAAGCGCTCCAAAAGACGTTGGAGCCCTCTGCCCTTCAACATCATAGAAAACGACGCCCCTCCATTTCCAAAGGAAGTTGATCTGGTTGCATCTGATTCTTCTGCCGCATACAACGTGTACTACACCCTCAGTGGGCCTGGTGTGACAGAGGACCCTGTGGGTGTGTTTAGTGTGGTAAAGGAAACTGGGATGCTGAAGGTCCACAGAGCTGTTGACCGCGAGGTTACCCCTCAGTTTATATTTCAAGCCAGAGTGTTTGACAGATACACCAACCAGGAGACAGACTTACCATTACCCATCACAGTGAATGTAGAAGATGTAAATGACAATGCACCAACTTTCACTGGACAACTGCAGTTTACTGTGCTGGAACAAAGCAAAACAGGTACCGTTGTGGGGAAGGTGAATGCCATAGACAAAGACGAGCCTGGTACAGACCACACTAAGATCAGGTACTCCCTCCTCTCTGGGACCAACCTGTTCTACATCAACCCAGAGACAGGAGTCATCAGCACCAAAACAGACACTCTTGACAGAGAGGTGAACGACAAACATTTTGTGACAGTGGACATCAGAGACATGAATGGCGCTCTGAATGGTCTATCAAACACGGCTACAGCCACAATAGTTGTGGGAGATATCAACGACAACCCTCCCACTTTTAAAAAGACATCTTATAATGTGAGTGTTATGGAGAACCAAGAGAAAGGCCTCATCCTCAGAATCCCTATTGAAGACAAGGACTTAATTAACACACCAAACTGGAACTCTGAGTTCATCATCACCAAGGGGAACGAAAATGGGAACTTCAGGATGGAAAGAGACCCAAAAACAAATGAAGGACTAATTTACCTAACAAAGCCTCTAGACTACGAGAAGACCAAGAACCTAAAGCTGGATGTGATGGCCCGTAACCAGGCTGAGCTGAGTGGGACCAATGCCAAGTGGGTGTCCATCCCTGTGGATGTCACAGTGGGGGACGTGGACGAGGGACCAGAGTTCACTGCCCCCATCGTACGATTTACTGTCCAGGAGAATACTCCAAACGACACCCTGATCGGAACGTACACTGCTGTAGACCCAGAGACCAAGAGCAGCGCTGGCATCAAGTATTACAAGGTCTCAGACCCAGCTTCATGGATCAATGTCGATGAAAGCACTGGACAGCTGAAGATCGCCAACACAATCGACAGGGAGTCCCACTTCGTAGTGGATGGTGTTTACAACGTCACTATGAAAGCTGTGGATGCCAGTCGGAAGACAGGTACAGGGACGGTGATTATTCAAGTGGAAGACATGAACGACCACGTCCCAGACATCCTCTCTAAAGACCTGGTGTTGTGTgagaaggatgggggagagatgggctCTGTGTTGGTGGTAGCAGAAGACAAGGACCAAGCTCCCTTCTCCGCCCCCTTCAGCTTCAAACTGGGAGAGAAGCATGATGACAACTGGGCTGTGAAGCCACTTAACAGCACTGCAGTGATGTTGGCGCAAACTAAGGAGCTCCCCACCGGCCTATACACTGTCCCCCTGATGGTAGTGGACCTGCAGGGCTTTGGAAGTACCCAGACTGTGACGGTCCGGATCTGCCGCTGCAGGAACGGAGCGTGTCTGGCCCAACAGAACTCCACATCTTTGGGGGTGTGGGGCATCCTGGCCATGTTGCTCGGTCTGGCTTTGCTACTTCTACTCTGTATCCTTTGTGCATTCGTGTGTGTGACGAAGAATGAGAAAATGGAGCTGGAGGATATGGGAGACAGTGGTGGTATCCTGCTGACGTCTAACATTGAGGCCCTAGGGGATGCAGTGGATTCAAATCTCATCATTGTTCCAAAGTCTGGGATTGACCGTTCAGTGAAGGGATCCGTGATTGACATGGGGTGGGCTGGAGCTAAGGACTTGGGTAAGATGGGAGGAGACCTGGGCACTCAACAGCAGTCCGGCAGCAGCGTCATTGTGACCGATATGCAGAACGGCTTCTCTGACCGATACAACGGCAGTCAATACGGTGGACAAAATGGCGGTGGACAATATGGTGTAGATCAATATGGTGGCGGACAATATGCCAGTGGCAATATGACTTTTGACAACACACGTTTCATGAAGATCAACTGGCAAACCAACGGACTGTTTCTACAACAGAAGTTGGCTTACCTAGGGACGGAAGAGGAGGGACGGTACGCCGATGACATCATCCACGCGTACGGCTTCGAGGGGGTGGGGTCTTCAGCTGGCTCGGTGGGCTGCTGCAGTGACCAAGTCAACCAGGAAGACCTGGACTTCCTGAACACACTGGGGCCAAAGTTCAAGGTGTTAGCTGAGGTCTGCACTAACAAATGAACCAGGAAGATCTATTGCAATATTGTTTTTACTATAGAAAGTGTTCTctcatgtttgttttttgttgatAATTATGAATTATCAGAGGGTTGGCATGCTATTATTATCAAGGGTGATACAAAACATTGAGTCAGTCATCACACTGAATTGCTCAAACTGTTTGTTGGTTAGAGCCTTTTTGCACTGGAAAGTACTATGTATTGTAAATAGTGTACATTTAGTGATTTAAGTGCCAAAGataagattttttttgttgtaaaataTGGTAAAAGTTTCAGTGTTGTAGAATCAAATGTTTGTTTATGAGATGCTGTAAAAACAGTACTTGAATGTTAGATAAGATGAGATTTTTCTAATTACCTATGAACTGAATGGGGTACAAACATTACTAAATAAAGTCTATATTTCTCTTTCAATGTTGGATAACCTGAATAATTAAACCTTGCACTTATTGTCCTAGCTATATTTTGTACCATTGTACGTTCTGTACAAGTCAACACATGATAATGAAATAAGTAGAGTGAATATGACCATCTAAAGCAGACTGTATGTAATCCAATCATTTTTTCAAGACTGTTTGTGTGAGATTCTAAATGGCATTTCTCATCACTTTTTAGCCATCAAAGAGTAAAACTGCCTTGTCGATTAGGCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU840616 lncRNA downstream 4835 68829266 ~ 68829505 (-) True G740372
TU840613 lncRNA downstream 6730 68827134 ~ 68827610 (-) True G740369
TU840340 lncRNA downstream 397616 68436407 ~ 68436724 (-) True G740103
TU839468 lncRNA downstream 553650 68280470 ~ 68280690 (-) True LOC118965617
TU839382 lncRNA downstream 608198 68225934 ~ 68226142 (-) True G739207
TU840633 lncRNA upstream 2307 68858339 ~ 68858755 (-) True G740389
TU840645 lncRNA upstream 13594 68869626 ~ 68869959 (-) True G740400
TU840606 lncRNA upstream 40176 68896208 ~ 68898424 (-) True G740363
TU840640 lncRNA upstream 52545 68908577 ~ 68908882 (-) True G740395
TU840683 lncRNA upstream 149741 69005773 ~ 69005990 (-) True G740436
XM_021613477.2 mRNA downstream 187594 68542258 ~ 68646746 (-) True LOC110530422
XM_021613475.2 mRNA downstream 523303 68303741 ~ 68311037 (-) True LOC110530421
XM_021613476.2 mRNA downstream 523365 68303741 ~ 68310975 (-) False LOC110530421
XR_005053025.1 mRNA downstream 551268 68280476 ~ 68283072 (-) False LOC118965617
XM_036986055.1 mRNA downstream 564497 68256933 ~ 68269843 (-) False LOC110530419
XM_021613483.2 mRNA upstream 45687 68901719 ~ 68908113 (-) False LOC110530425
XM_021613482.2 mRNA upstream 45687 68901719 ~ 68908188 (-) True LOC110530425
XM_021613484.2 mRNA upstream 52963 68908995 ~ 68995260 (-) True LOC110530426
NM_001124561.1 mRNA upstream 295278 69151310 ~ 69157559 (-) False igfbp1
XM_036986062.1 mRNA upstream 327135 69183167 ~ 69232994 (-) False LOC110530970
TU838580 other downstream 1409001 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 1413284 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 1452363 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 2119844 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 2273823 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 294311 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 552936 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 869742 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 869742 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 926257 69782289 ~ 69783294 (-) True G741177

Expression Profile