RNA id: TU840728


Basic Information

Item Value
RNA id TU840728
length 1708
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110530970
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69114482 ~ 69240965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacagcactttgagatatcagctgatgtacgaagggctatataaaataaatttgattgattgattgacaactGGACAATCACGCCTAGGATGGCTGCACGATAAAATCACGCAGACTTGATTGAGTTTGTTGTTACATAAATAGTGACTTGCCACTGTTTGCAACCAAACACAATCAACTGAAGATTTCCGGCTACCAGCATTGGAACATCAGGCTCCTGGTGACATGACCAGAAGTATGAGTGAGTGTGGCAGCCAGGTGATAGTGTgttgtccctctgtgtgtgtacaCTCCCAACAGGGGGACATGCACAAAACACAGCCCAGTATTATCAACCTAAAAAGACAGAACTTTTTATGTCTTCTTCTCTGATTATGCCAAGGATTCATTCCATCCTTCAAGGTGTAGTAGGCTAGTTTTCGTGTACTGTAAATACggtatgcatgcatgtgtgtattcATACACAAGTATttatatgtgtgtatgcatgtgggtGTTCGACCTTAAATCTTAAATGAAATAGCACAAATACACATTTTTATACATTCAAAAAGTCTCAAAAGGCTTTTGACACAACGTCTTTAGTAGTGCATGACCTGTTAGTGCTGGTCTGGACTAGTCTGGTTTCCTGTCGAGTGTAAACCAAAGCAATGAGCTCCTCTAACATCCTGTTGTTTAGTACTTCGTCCTTCACAAAAGGAGCACTACTGCCGTCTAGGTTTCTGGCTTTTTAGAGCAAGTCATGGTCAGGGGGGGGTCAAACACTCAATAGTCAAGATATATGGTTTACTGCATATGACATATTTTAAGTCTCATGGATCCAAACAAATAATCATGGCTGTTTGGTAAGACTGTTTAGAACCAGAATGGTCTGGTTTTACATAAGGGTAAGTCACTTAGTGTTACATTTCTAATGTAGGGAACcaggtgcaacacacacacagtcagacataGCTTTGTTTGCATCCATGAACTTGTCGAGTTGTGTATTGATCAAGGCTTGTTATTCGTCCATTGCTCTGCCCTGATAGGGATtatgtgtgggggtgtgtgtcctGTGTCGGCTATACACGCAGCAGGCTGTAGCCAAGGCTTTGAAGGGACAGGGAGGTCGGTAAAATAGGCATTGGGTAAGGTGCGTTGGCTTTGACCCACAGTGCGATGCCCTCATCCTTGAGTCCCCGATGTAGGCTATAGAACTTTAGTTAATGCCAAACCTGGAACAGTCTCTCTTACGCACAACCACCAACACATACGTATGTATGCTCGCTCCTTCACACATtctttgtgacacacacacacacacacgcacacacgcacacacgtacacacgtacacatgtacacacgtacacatacacacagagaaaacagtATTCTGCAAATACGTACAGACTTAGCAACATCTGTGGCAGCTGTAGAATCACAGTGTTTCCAACTCCCATGCTGTAGACTATGACCATTAGTTAGAGAGATGAAGACTTTCCCTTGATCTGCAAAAATGTAAATACATCAAGTTTCAAGTATTTTGCCTTACTTCTATAAATGCTTACAGTGATTGAAAAATGCCTTTTTAGCGCATCACTTTGACACGCAGAACTTTGTAAATAAATGACTACTACAGCTGTAAACAACGTTGTATCTTGTACAGTGTAAAGTTGGGTTATCTCAGATTTTGTAATAAACACACTTTATTGATGTACAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU840734 lncRNA downstream 31655 69146733 ~ 69149813 (-) True G740468
TU840745 lncRNA downstream 112275 69068630 ~ 69069193 (-) True G740478
TU840696 lncRNA downstream 156596 69024018 ~ 69024872 (-) True G740448
TU840685 lncRNA downstream 174861 69006333 ~ 69006607 (-) True G740438
TU840684 lncRNA downstream 175237 69006005 ~ 69006231 (-) True G740437
TU840880 lncRNA upstream 67702 69250899 ~ 69263627 (-) True G740604
TU840964 lncRNA upstream 172717 69355914 ~ 69357766 (-) False G740684
TU840968 lncRNA upstream 172717 69355914 ~ 69357999 (-) False G740684
TU840965 lncRNA upstream 173259 69356456 ~ 69357766 (-) True G740684
TU840970 lncRNA upstream 176185 69359382 ~ 69359622 (-) True G740685
NM_001124561.1 mRNA downstream 23909 69151310 ~ 69157559 (-) False igfbp1
XM_021613484.2 mRNA downstream 186208 68908995 ~ 68995260 (-) True LOC110530426
XM_021613482.2 mRNA downstream 273280 68901719 ~ 68908188 (-) True LOC110530425
XM_021613483.2 mRNA downstream 273355 68901719 ~ 68908113 (-) False LOC110530425
XM_021613478.2 mRNA downstream 325434 68834340 ~ 68856034 (-) True LOC110530423
XM_021613494.2 mRNA upstream 251345 69434542 ~ 69450423 (-) True si:ch73-40a17.3
XM_036986849.1 mRNA upstream 278723 69461920 ~ 69474389 (-) True LOC118965618
XM_021613495.2 mRNA upstream 294109 69477306 ~ 69487134 (-) True LOC110530436
XM_021613499.2 mRNA upstream 353971 69537168 ~ 69553690 (-) False LOC110530438
XM_036986068.1 mRNA upstream 354056 69537253 ~ 69553690 (-) True LOC110530438
TU840819 other downstream 23742 69150343 ~ 69157726 (-) True igfbp1
TU838580 other downstream 1756129 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 1760412 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 1799491 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 2466972 66713693 ~ 66714496 (-) True G737422
TU841006 other upstream 225771 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 542577 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 542577 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 599092 69782289 ~ 69783294 (-) True G741177
TU842116 other upstream 968610 70151807 ~ 70160838 (-) True LOC110530971

Expression Profile