RNA id: XM_021613494.2


Basic Information

Item Value
RNA id XM_021613494.2
length 3471
RNA type mRNA
GC content 0.47
exon number 14
gene id si:ch73-40a17.3
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69434542 ~ 69450423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTACTTTTATCTGGTCTATCGGACTAGCTTAGCACCTTTTTCAAGTCTGTCTGAGAGGCCAAGGCTACTAATTCTTAGTGTTCCATACTAAGGGATTCTTTGACTAGGGAGTAAACATGGGGAGGAGAACTACATATTTAGTCATCCTCCATATTTCATGGATCTTATGTGAAAATGTCTTATCTCTGCCTACACCAAGAGTTTTAGAATATGATGTGGATGGTGGAAGGGACATGGACATCTTTGATATCAATGAAGAGGCTGGGTTAAACCTGGTGGAGGGGGATATTGAGCTTGATGAGAAACAAGGCCGGAATTCTATAATAGGGGATCAATACAGATGGCCAAAGACTGTTCCCTACTACTTTGAGGATGACTTGGAGATCAATGCAAAAGGTGTTATCCTGAAGGCCTTTGAACAGTATCGCCTGAAGACCTGTATCGACTTCAACCCCTGGGAGGGAGAGCAGAACTACATTTCCATTTTCAAAGGAAGCGGTTGTTTCTCATCTGTGGGTAACCAACATGTGGGGAAACAGAGGTTGTCCATCGGGACCAATTGTGACCGCATTGCGACCATCGAACACGAATTCCTCCATGCACTGGGTTTCTGGCATGAGCAGTCACGGTCGGACCGCGATGACTACGTCACCATCCTGTGGGACCACATCTCTGAGGGTAAGGAACACAACTTCAACACGTACAATGACACCATGTCCAGTTCTCTGGGTGTCCCCTACGACTACGGTTCCATGATGCACTACAGTAAGACTGCGTTCAGGAACGGTACCGAGCCCACAATCGTCACCAAGATCCCCGCCTTCGCTGATGTCATCGGTCAGCGCATGGAGTTCAGTGATAATGACCTGCTCAAGCTACGGCGTCTCTACAACTGCACACGCTCCTCCACTTTCCTGGACACCTGCGACTTTGAGAGAGAGAACATCTGTGGTATGATCCAGGGGCCGGGGGACCAGGCAGAATGGACAAGGGTGACCCAGGCGCCTGGCGGGCCCAACACGGACTACTCCAACATGGGCAAATGCACCGGCTCAGGCTACTTCATGCACTTGAGCACTGCCACAGGCAAACCAGCAGACACAGCCAGGCTGGAGAGCAGACTGCTCTACCCCAAGAGAAGCTACCAGTGCCTGCAGTTCTTCCTCTACAATGGTGGTGGCGCCAACGATCAGCTGGTGATCCTTGTCCGAGAGTACGATGAAGCCCACCCCAATGGAACCCTGCGTGTTATTCAGCCCATAGTTGCACCACCTCAAGACCTATGGCACCTGCACCATGTGAGCCTGAACGTGGTCAAGAAGTTCCGGGTGGTGTTCGAGGGCATCAAGGGTGACGCCCCCTCCACAGGTGGTCTCTCCCTGGACGACATCAACCTCTCTGAGACTACCTGCCCCGACCACGTGTGGCGGGTGAAGAACTTCAGCCACATCATGGAGACCACTCCTAACGACAAACCCATCTACAGCCCCCCGTTCAAGTCCAGAGAGGGCTACACCTTCCAGATGGGGCTCTACCCCAGTGGGAAGGAGGGCTACGCGGGGGAGCTTTCTGCCTACGCCCACCTGGTGACCATGACCGGTGACACAGAGGTGCGGAAGTGGCCGTGTCCGTGGAAACAGATGACCATGATGCTGTTCGATCAGAACCCAGACATCATGAGGCGTATGAACAACCAGCGCAGTGTCACCACCGATCCTACTAAGAAACTCAGTGAGACTTCAGAGCTGTTCTTCTGGGATGACCCTCGTAAGGTGGGCGTTGAAGTGTCAGCGGCGGATGGGACCAAATATTTTCGTGGGCCGGGTGCCGGGACAACCGCGTACCTCACCCATGGCAGGGCCAAGAGCAGGGACTTCATCAAGGGGGGAGACGCCATCTTCCTGCTTACCATGGAGGATGTGTCACATCTTACGGTGACCCAGCCCGTACCCTCCTCCACATTGCCACCAGTCACCACGGTTACCACCGCCATATTGCCACCTACTGACCCCTGCACTAAGGTCACATGTGGGAATGAGGGCGTCTGTGTGGTGGATGCTGGAAATGCTCTTTGCAGGTGTGCAGTTGGTGACGACTGGTGGTACTACGGAGAGAGTTGTCAGTATCAGGGTTCCACCCAGGACACGATGACCACAGCGCTTATAGCCTCTTTCTCTGTGCTGGGTGGCATGTTGGTGGTGACtgcagtcagtgtggtgtgtgtgaagaGGAAAAACAAGAACAGCGGAGGTGGAGGAGACCGGGGCATCACCATGTCCAATGTCACCGTCACAGGAATGTAATGTTTTTCCCCCTGCCAGAACCAAAACTATTCATGGCCAGCATTAAGTAGATGAAGAAGTTAACTACAAAAGCTACAACTCCTTCAAATATAAAATGACAAAAGATCTACTGGAAATTCCACTTAATGTCTCATCCCAATAATGATCTGCCTATCAGCCATGTATTTTGATCAGCCTGTTCATTTGACATGatttgtagtttatttgtgtaTGTAAATCTCCAACTATTTTCTTGTGTTAAATTTTTATTTAAACACTTGAAAGGGGGACGTGCTCTACCTCTCCCGCACAGGttattttcatttaccttaacatcccatttttttttgtatttgtgtgcaaatttaaaaaaaaatcctaaatATGCTATGAAGTGTATGTATTGTTCAGGGCATACGCTACATTAGTGTTGCTGTCATGTCATTTTCATATCAGACTCTTAATAGTTTTAAATTGAGAATTATATCTGAAATGTTTATTTAGTTGCAGTCATGGAATGGAAGGCATTAGGGGCATAAATATAATAAGTGGTTCTAAAGTTCGTCTGATTTTGAAATTAATGAGATGCTAATATAAACATTTGACAATATTGACCTCTTCTGGTCATAAGGTGCACATACATCTGATTTTCGAATGAGGGCTCTATTCAATAAGTAGCACTGAAGTTCTGTGTTGTAGCCAGATTGACATTTAgaggcaatgttcccgcgttagCAGACAcggcattcacggtaaacgctacATGTCagctcaattggaaattacctCTAAATTTCAAGCGTGCTATAGAGCCAAACTTCAGCTATagagattgaatagagcccttactCAAACTAGAGCTATAGTATGACACATGTGCAATGAGATTATCCTGCATTTCTGGATAACAGTAATTTGAAATTGTATTGTAAAGTATAATTGAAAGCTATCAGCTATACTTATGGCTGTTTTTTGGTTTATAGGAACTTAAAATTGTATGACCTTAATCTGCAAAATACAAGTGGGTCATACATTGAAAAAGGGGAGGAATTACTGAGAGAAATGATTGTATACAAGTTTACACATGTGTCaaacgcacacagagagagaatttAAAATGTCACTGCAAAATATAAAATACCACTAGAACAACAAAGCTTACAAATGTAAGATTTATTATACCAAA

Function

GO: NA

KEGG:

id description
K08606 MEP1B; meprin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU840961 lncRNA downstream 3058 69431270 ~ 69431484 (-) True G740681
TU841007 lncRNA downstream 4023 69429452 ~ 69430519 (-) True G740718
TU840998 lncRNA downstream 37530 69396618 ~ 69397012 (-) True G740711
TU840997 lncRNA downstream 40843 69393499 ~ 69393699 (-) True G740710
TU840995 lncRNA downstream 42077 69392248 ~ 69392465 (-) True G740708
TU841115 lncRNA upstream 72966 69523389 ~ 69523687 (-) True G740816
TU841116 lncRNA upstream 73802 69524225 ~ 69524461 (-) True G740817
TU841273 lncRNA upstream 107328 69557751 ~ 69557980 (-) True G740963
TU841341 lncRNA upstream 201418 69651841 ~ 69661122 (-) True G741021
TU841391 lncRNA upstream 270066 69720489 ~ 69720841 (-) True G741071
XM_036986062.1 mRNA downstream 201548 69183167 ~ 69232994 (-) False LOC110530970
NM_001124561.1 mRNA downstream 276983 69151310 ~ 69157559 (-) False igfbp1
XM_021613484.2 mRNA downstream 439282 68908995 ~ 68995260 (-) True LOC110530426
XM_021613482.2 mRNA downstream 526354 68901719 ~ 68908188 (-) True LOC110530425
XM_021613483.2 mRNA downstream 526429 68901719 ~ 68908113 (-) False LOC110530425
XM_036986849.1 mRNA upstream 11497 69461920 ~ 69474389 (-) True LOC118965618
XM_021613495.2 mRNA upstream 26883 69477306 ~ 69487134 (-) True LOC110530436
XM_021613499.2 mRNA upstream 86745 69537168 ~ 69553690 (-) False LOC110530438
XM_036986068.1 mRNA upstream 86830 69537253 ~ 69553690 (-) True LOC110530438
XM_021613508.2 mRNA upstream 606080 70056503 ~ 70076393 (-) False LOC110530443
TU841006 other downstream 3889 69408968 ~ 69430653 (-) False G740718
TU840819 other downstream 276816 69150343 ~ 69157726 (-) True igfbp1
TU838580 other downstream 2009203 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 2013486 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 2052565 67381220 ~ 67381977 (-) True G738472
TU841403 other upstream 275351 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 275351 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 331866 69782289 ~ 69783294 (-) True G741177
TU842116 other upstream 701384 70151807 ~ 70160838 (-) True LOC110530971
TU842204 other upstream 748488 70198911 ~ 70200278 (-) True LOC110530449

Expression Profile