RNA id: TCONS_00005790


Basic Information

Item Value
RNA id TCONS_00005790
length 1025
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_001773
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 282324 ~ 283931 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGAAACGGATCGACCTGGAAAGCCTGAATGAGCACTGAAATCAAGAGAAGTCCCAGAGGAGCTCTCCATCCCGCATGGATCACAGGAAAGTcccagccctgtgtgtgtgtgtgtgtgtatgtgtgtgcgcgagcGTCCTCTGCTGTTTGACAGCAACACACACTGGAATCCACCCAGAAACACAAGTGCATTCACTCAACACAAAGAGGGAAACTCAGCCCTCTATAATCACACTGCAATGGtactttccacacacacacacacacacacacacacacacacacacacacacacatgtgctcaGGTGTTTTGTGAACGCACCTGTTGACACTCCCAGTCAAAGCTGTGTAACCCGAGCGTGCATGAATGTCCTCAATACTGCAGACTGTCAcctgtgcaaacacacacacacacacaataacacacaatAACACACCGGCAAAGCGGCTTTGTAGTAAAGTTTATACAGTTAAAATGCTGAGCATTACATCGAGAGCACAATGAGACGAGATGGAGACATGAGTGAGAGCACGGCACACTGACAGCAGCGCTATTTACAGCTTCTCTGAGAGAGTCCAGACGCTGAGCCAgcaatcttcatcatcatcatcagtcgtCATCTGCTCTGCTTAAAACTataaattaaagggacagttcactcaaaagttATATTAACTCAACTTTAATCGCCTGCATGTGCTGTCGAACATGTTTGAGACTCTTTTATCCGTTGAACACTAaaggagatgttttgaagaatgttggaaactggtaaccattgacttccatagtaggaaaaacaaatggaagtcaatggttacctttCATAGTAGgaaaaacaaatagatgtcaatggttaccggtaaACATTGTCTTCTATAGAAGGAAAAcaaatggaagttaatggttacctgTAACACTTACATAGTAGAAAAATTAAATGGAAGGTAATGGGTACCAGAAACCAATGACTTTCATAGAAAGAAAcataaatggaagtcaatggttatcggtaaccattg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005789 lncRNA upstream 88442 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA upstream 88442 190543 ~ 193882 (+) True XLOC_001769
TCONS_00003567 lncRNA upstream 91841 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005787 lncRNA upstream 148355 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005788 lncRNA upstream 157025 121926 ~ 125299 (+) True XLOC_001767
TCONS_00005661 lncRNA downstream 114413 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005791 lncRNA downstream 135302 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005662 lncRNA downstream 256362 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 256501 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 256978 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003572 mRNA upstream 25281 252425 ~ 257043 (+) True XLOC_001772
TCONS_00003571 mRNA upstream 58439 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003570 mRNA upstream 58458 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003565 mRNA upstream 85509 187760 ~ 196815 (+) False XLOC_001769
TCONS_00003566 mRNA upstream 91352 187764 ~ 190972 (+) False XLOC_001769
TCONS_00003573 mRNA downstream 50696 334627 ~ 349756 (+) True XLOC_001774
TCONS_00003574 mRNA downstream 91111 375042 ~ 382616 (+) True XLOC_001775
TCONS_00003575 mRNA downstream 115432 399363 ~ 400213 (+) True XLOC_001777
TCONS_00003576 mRNA downstream 122215 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003577 mRNA downstream 129571 413502 ~ 417188 (+) True XLOC_001778
TCONS_00003569 other upstream 70377 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 222632 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 521313 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1380991 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1891652 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2404634 2688565 ~ 2688681 (+) True XLOC_001815

Expression Profile

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