RNA id: TCONS_00003573


Basic Information

Item Value
RNA id TCONS_00003573
length 330
RNA type mRNA
GC content 0.60
exon number 2
gene id XLOC_001774
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 334627 ~ 349756 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacacacacacacaagtatcCGGCCGTACAGGTGTGATCTGTGTGAGAAGGCGTTCACACAGCGCTGCTCTCTGGAGTCTCACCTGCGTAAGATCCACGGTGTGCAGCAGCAGTACGCGTACCGCCAGCGCCGCTCCAAGATCTTCGTGTGTGAGGACTGCGGCTTCACCTCCAGCCGACCCGACCAGTACTTCCTGCACGTGCGGCAGCAGCACCCCGGCAGCCCCGCTCTGCGCAGATACTACCGAAAACACATGCTGGAGGGCCCCGGACCCCATAACATCAGCCCCTACATGCTGTATCCCAGCGCAGGACTCTACATATGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070820-19 Predicted to enable metal ion binding activity. Located in nucleus. Orthologous to human OVOL3 (ovo like zinc finger 3).

Ensembl:

ensembl_id ENSDART00000169455

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005790 lncRNA upstream 50696 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005789 lncRNA upstream 140745 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA upstream 140745 190543 ~ 193882 (+) True XLOC_001769
TCONS_00003567 lncRNA upstream 144144 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005787 lncRNA upstream 200658 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005661 lncRNA downstream 48588 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005791 lncRNA downstream 69477 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005662 lncRNA downstream 190537 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 190676 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 191153 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003572 mRNA upstream 77584 252425 ~ 257043 (+) True XLOC_001772
TCONS_00003571 mRNA upstream 110742 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003570 mRNA upstream 110761 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003565 mRNA upstream 137812 187760 ~ 196815 (+) False XLOC_001769
TCONS_00003566 mRNA upstream 143655 187764 ~ 190972 (+) False XLOC_001769
TCONS_00003574 mRNA downstream 25286 375042 ~ 382616 (+) True XLOC_001775
TCONS_00003575 mRNA downstream 49607 399363 ~ 400213 (+) True XLOC_001777
TCONS_00003576 mRNA downstream 56390 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003577 mRNA downstream 63746 413502 ~ 417188 (+) True XLOC_001778
TCONS_00003578 mRNA downstream 78513 428269 ~ 432188 (+) True XLOC_001780
TCONS_00003569 other upstream 122680 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 156807 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 455488 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1315166 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1825827 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2338809 2688565 ~ 2688681 (+) True XLOC_001815

Expression Profile

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