RNA id: TCONS_00005661


Basic Information

Item Value
RNA id TCONS_00005661
length 416
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_001776
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 398344 ~ 398759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatactccatcagctgttttagtgtctgttgtgtttttggctgtttgtctccatctagtgtctgaataatgcgcaggttagtgtattctccatcagctgttttagtttctgttgtgtttctgactgtttgtctccatctagtgtctgaataatgcacaggttagtgtatactccatcagctgttttagtttctgttgtgtttctgactgtctccatctagtgtctgaataatgcacaggttagtgtatactccatcagctgttttagtttctgttgtgtttctgactgtttgtctccatctagtgtctgaataatgcacaggttagtgtatactccatcagctgttttcgtttttgactgtttgtctccatctagtgtctgaataatgtgcaggttagtgtatactccatcagctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005790 lncRNA upstream 114413 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005789 lncRNA upstream 204462 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA upstream 204462 190543 ~ 193882 (+) True XLOC_001769
TCONS_00003567 lncRNA upstream 207861 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005787 lncRNA upstream 264375 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005791 lncRNA downstream 20474 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005662 lncRNA downstream 141534 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 141673 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 142150 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005794 lncRNA downstream 142150 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003574 mRNA upstream 15728 375042 ~ 382616 (+) True XLOC_001775
TCONS_00003573 mRNA upstream 48588 334627 ~ 349756 (+) True XLOC_001774
TCONS_00003572 mRNA upstream 141301 252425 ~ 257043 (+) True XLOC_001772
TCONS_00003571 mRNA upstream 174459 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003570 mRNA upstream 174478 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003575 mRNA downstream 604 399363 ~ 400213 (+) True XLOC_001777
TCONS_00003576 mRNA downstream 7387 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003577 mRNA downstream 14743 413502 ~ 417188 (+) True XLOC_001778
TCONS_00003578 mRNA downstream 29510 428269 ~ 432188 (+) True XLOC_001780
TCONS_00003579 mRNA downstream 40933 439692 ~ 449159 (+) True XLOC_001781
TCONS_00003569 other upstream 186397 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 107804 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 406485 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1266163 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1776824 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2289806 2688565 ~ 2688681 (+) True XLOC_001815

Expression Profile

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