RNA id: TCONS_00003575


Basic Information

Item Value
RNA id TCONS_00003575
length 851
RNA type mRNA
GC content 0.59
exon number 1
gene id XLOC_001777
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 399363 ~ 400213 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGCCTCGATACCCGTCTGCGGCTGATCTGGACGCCTACATGCAGAGGACGTCCCACAACCCGCTGACCATCCGGATCTTCCCCTCCAGCATCAGAGTCCCTCAGCATAAGCAGATCAGCAGAACCGTCAACGGCCTGGACACCAGATTCAGCCCCTACCCGCATCAACACCCCAGCGCCTACCAGGGCCTGCTGACCATCGCCAAAACACATGCGCAGATTAAAGGAGTATTAAAAAATCACCATGGCAAACGAACCAAACTGTCTCCAATACAACAGGCGGCCGCTCCGTATGCACCGCTCCAGCAGATGCCGTGTGTGGCCCAGCACACCTCCCGGCCATCCAACCCTTCCATACTAGCGTCCTGCGCTGATTCGGGAGTATCGCTCACTCAGAGCGGACACTCCGGAGCTGTTTTGCCCACACAGAGCGCAGATGTTGCGGGTTTGGATTATTGTGTGCAGGGGTACGGCTCCGCAAGCAGACCCAGCATCAGAATCTCAGAGGTCTGCTACAGATCTGAAAGCAAACTCTCATCATCTCCTGCAGTGCGTGAGTTTTCGGCAGGACAGTTTTTGGCTCCTGCTTGGTCCGGTGTTCTGGTGACTCCGGATAGTGAGTGTTTTAAGGCTCCAGCGCTGCCCGCCGGTGGCTCCACAGGTCTGGGGAAGCATCCGGCCGTGTACCCCGGCTTTCCTCACGGCCTCAGCAGCAGTCTGCGCTCTCTGGAGAGCCTGATCAGCGGGATCCATCCGGCCTGCATCAAGGAGCGCATGCTGGGCCGAGGGTTCGAGAGCGTCCCGCCGCTGCTGGAgccgccacacacacacatgcagctgCACAGATAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-42 Is expressed in several structures, including margin; nervous system; neural tube; periderm; and tail bud. Orthologous to human FAM222A (family with sequence similarity 222 member A).

Ensembl:

ensembl_id ENSDART00000147449

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005661 lncRNA upstream 604 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005790 lncRNA upstream 115432 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005789 lncRNA upstream 205481 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA upstream 205481 190543 ~ 193882 (+) True XLOC_001769
TCONS_00003567 lncRNA upstream 208880 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005791 lncRNA downstream 19020 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005662 lncRNA downstream 140080 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 140219 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 140696 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005794 lncRNA downstream 140696 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003574 mRNA upstream 16747 375042 ~ 382616 (+) True XLOC_001775
TCONS_00003573 mRNA upstream 49607 334627 ~ 349756 (+) True XLOC_001774
TCONS_00003572 mRNA upstream 142320 252425 ~ 257043 (+) True XLOC_001772
TCONS_00003571 mRNA upstream 175478 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003570 mRNA upstream 175497 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003576 mRNA downstream 5933 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003577 mRNA downstream 13289 413502 ~ 417188 (+) True XLOC_001778
TCONS_00003578 mRNA downstream 28056 428269 ~ 432188 (+) True XLOC_001780
TCONS_00003579 mRNA downstream 39479 439692 ~ 449159 (+) True XLOC_001781
TCONS_00003580 mRNA downstream 53406 453619 ~ 454622 (+) True XLOC_001782
TCONS_00003569 other upstream 187416 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 106350 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 405031 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1264709 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1775370 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2288352 2688565 ~ 2688681 (+) True XLOC_001815

Expression Profile

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