RNA id: TCONS_00003578


Basic Information

Item Value
RNA id TCONS_00003578
length 650
RNA type mRNA
GC content 0.54
exon number 6
gene id XLOC_001780
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 428269 ~ 432188 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACCCTCGCTTCCTGATCGGCTCCGGAGACAACCCTACTGTCCTGCAGgagggCTGCAGATATAATGTCCTGCACGTGGCAGCGAAGGAGAATCAGGCAGGAATGGCTCGTCTTCTGCTGGAGACGCTGGAGGACCCGGAGTTCATGAAGCTGATGTACCCGCAGGACCAGGAGAACATGCTGAGCCAGCGCATACGCTATATAGTGGACCTGTACCTGAACACACCAGACAGAGCTAGTAACGAGACGCCGCTGCACTTCGCCTGTAAGTTCGGCTGTCCAGAGGTGGTGAATGTTCTGTGTTCTCATCCGTTCATCGATAAACACTGCAGGAACAAATACGACCAGCAGCCGTCCAGTGTGATCTGTGAGCGAAAGAACAGAAGTAAAGACGTGAAGCAGAAGATCCTGCAGTATCTGGAAGACAGGTTTTATGTGCCATTACTGCGTGCTGAAGACAACACTCTGCCTCCGGTGATCGGCGCCCCCTGGTGTCCTGGTGCTCAGGAGTCATGTGACCAATCGCTTGAGCAGGACAGAGTCATGGACAGTCCCAAAAACCCCATAATGACCATCAGGGCTTTCGTTGGGCCTCTGAGTTCCGCAAAGGCAGAGGAGTTTCAGAGACGGTGGAAAACACCGCCGCGG

Function

GO:

id name namespace
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:0007084 mitotic nuclear envelope reassembly biological_process
GO:0042326 negative regulation of phosphorylation biological_process
GO:0018345 protein palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0051721 protein phosphatase 2A binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-26 Predicted to enable protein phosphatase 2A binding activity. Predicted to be involved in negative regulation of phosphorylation and positive regulation of protein dephosphorylation. Predicted to act upstream of or within cell division; mitotic nuclear membrane reassembly; and protein palmitoylation. Predicted to be located in Golgi membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human ZDHHC8 (zinc finger DHHC-type palmitoyltransferase 8).

Ensembl:

ensembl_id ENSDART00000140715

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005791 lncRNA upstream 7377 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005661 lncRNA upstream 29510 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005790 lncRNA upstream 144338 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005789 lncRNA upstream 234387 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA upstream 234387 190543 ~ 193882 (+) True XLOC_001769
TCONS_00005662 lncRNA downstream 108105 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 108244 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 108721 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005794 lncRNA downstream 108721 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005793 lncRNA downstream 108721 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003576 mRNA upstream 11081 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003577 mRNA upstream 11081 413502 ~ 417188 (+) True XLOC_001778
TCONS_00003575 mRNA upstream 28056 399363 ~ 400213 (+) True XLOC_001777
TCONS_00003574 mRNA upstream 45653 375042 ~ 382616 (+) True XLOC_001775
TCONS_00003573 mRNA upstream 78513 334627 ~ 349756 (+) True XLOC_001774
TCONS_00003579 mRNA downstream 7504 439692 ~ 449159 (+) True XLOC_001781
TCONS_00003580 mRNA downstream 21431 453619 ~ 454622 (+) True XLOC_001782
TCONS_00003581 mRNA downstream 34738 466926 ~ 505370 (+) True XLOC_001783
TCONS_00003582 mRNA downstream 74350 506538 ~ 512306 (+) False XLOC_001784
TCONS_00003584 mRNA downstream 86358 518546 ~ 532628 (+) True XLOC_001785
TCONS_00003569 other upstream 216322 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 74375 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 373056 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1232734 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1743395 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2256377 2688565 ~ 2688681 (+) True XLOC_001815

Expression Profile

//