RNA id: TCONS_00003581


Basic Information

Item Value
RNA id TCONS_00003581
length 3004
RNA type mRNA
GC content 0.55
exon number 16
gene id XLOC_001783
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 466926 ~ 505370 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGACACACCGCTGCATTTCCCCGCAGACGCCCGGACAGCGCGCCGCCAGGATGCCCGCGGAGAAACCGGACCCTGAGGAGCTGCCGACCCAACCCTCGTCTCCAGATAACCCAGAGCAGGAGATTGTTCAGGAGACGGCGGATTCTCCATCTTCAGATGCCGTCGCAGAGGCACATacggAGAGCTCTGGGATTGGCACAGAGAAATCGTCCAGTCCTGACAGCGAGTCGAACCCACTTAGCTCCAGCAGCTCTAATGAACAGGTCATTCCCAGCGTCCTGAAGGAGAGTTCATGTGAAGAGTTGGACGACTCTCAGACATCATCTCCAGATGATCAGTGTGTAAATCAAGCAGAAGCTCCTGATGGATCTCCTGAAACGGAGGATCTTCCTCCTCATCCTGAACCCAGCTTGACGTCTGACCCTGCAAAGGAAGATCTTAAGGACCCGCTGGCTCTCTACAGTACACTACCAGCTCACAGCATGACCCTGCTGCACGGATTAACCTACCATCCATCCTTTCCCACCAGAAACTATATACCAGAGAACTGCTACACGCTGCCGCTGCACCGGGACAGCTTTCCAAACCGGAAATCGGAGCAGGATGTCTCCGCAGTCAGCCATCCCGTCCATCACATCCGGCCGACTCTGGATCTGTCAGCAGATGATCACCTGGCACCGCTGCAGCACGCGTATTTCCAAGACCTCTACCGGACACTCATCCCGCAGAAACGCGCCAGCATGGTCAGCCTGGACACCATCCGGAAGGACCCACGCTGGAGGGACCCAAACCTGCGGGAGGTCATCGCCATGCTGAGCCACCCCATGGACCCGGTGAAGTCTAACGCCGCCGCGTACCTGCAGCACCTCTGCTACGAGAACGATAAAGTCAAGCAGGACGTCCGGCAGCTGCGCGGGATCCCCGTCCTGGTGGGGCTCCTGGATCACCCCAAACCCGAGGTGCACCGTAAGGCCTGCGGAGCGCTCCGAAACATCTCCTTCGGCAGAGACAACTTCAACAAGGTGGCGATCAAGAACTCGGACGGCATCCCGGCGCTGCTGCGGCTGCTGAGGAAGTCCAATGACGTGGAAGTCCGAGAGCTGGTCACAGGAACGCTGTGGAATCTGTCGTCTCACGAGCCGCTGAAGATGATGGTCATTAATCACGGCCTGCAGACGCTTACGGACGAGATCATCATCCCGCACTCGGGTTTAAGAGGAGACCCCAATGATCCAGCCCGTCCCGGAGACCCAGAGTGGAACACCGTCTTCAAGAACACGTCTGGATGCCTCAGgaacGTGAGTTCAGACGGAGCCGAGGCGCGGCAGAGACTGCGGGAGTGTGACGGACTGGTGGACGCCCTGCTGCACGCGCTTTACTCTGCCGTCGCTAAAAGAGACATAAATAACAAATCGGTGGAGAACTGTGTCTGTATCTTGCGTAATCTCTCCTACCATGTGCACAAAGAGGTTCCCGGAGCTGAGAAATTCCACATCCAGGCGGCCAGTCACAATGCCAAACCAGCAGGACACCACAAGAAGGACAAGCCGGACTGTTTTGGCGGACGGACAACCAAAGGCAAAAGACACGGAGCTGTAGAGAAGAAGAGCGGCGGTGCTGATCTGCCCAAGAGGAGTCTGCCGATGAGAGgactgGAGCTCCTGTACCAGCCAGAGGTGGTGCGTCTCTACCTGTCGCTCCTCAAGCTGAGTCAGAACCACAACACACTGGAGGCGGCGGCTGGAGCTCTGCAGAACCTGTCAGCCGGACACTGGGCCTGGTCTAACTATATCCGGGCGACAGTGCGTAAGGAGAAGGGTCTGCCGGTGCTGGTGGAGCTGCTGCACTCGGATGCGGATAAAGTAGTGCGAGCTGTGGCCATCGCGCTCAGAAACCTGGCCATCGACCACAAGAACAAAGACCTGATCGGGAGTTACGCCATGAGGGATCTGGTCAGCAACCTGCCCTGCGGCCAGCAGCGCCCCGCCAAAAACCTGGAGGGAGACACGGTAGTGGCCATCCTGAACACCATCCTGGAGATCATCTCCGAGAACCTGGAGAACGCCAGATTCCTCATCCAGGGACAGGGCATTCAGAAACTGGTGTCAATCAACAGAACAAGCCAATCAGTGCGCGAGACCAAAGCGGCGTCACACATCCTGCAGGCGGTGTGGGCCTATAAAGACCTGCGACACACACTGCTGAAGGCCGGCTGGAACAAAACACACTTCAAGCCAGCCGTCTCCAGCCTGCCCAAAAAACTGAAGAACACCAAACAAGGGAACGATGACATCACACTGCCGCTGATGGAGAAGAACCAAGacggATACTGCAGCGTGGATCAGCCAGAGAGAGCAGGAGACGCTCCCTGCCACATGATCGAACGAGAAACTTTTCAGGGTGTGAATGATAAGAGGCACTTCATCAGGACCAGCAGGCCGGCGGTGGGCTTAGTGGAGCGGACCCCTCAGCCGCTGGACTCCTGGGTCTGAACTGGCTGCAGATCCACATTGACAGACGCGACCAGCCTTCAGCACAATCAAACCAGAGAAAATCAGCagatcatcatgtgttcatcatCCACACCAACAGAAGCTGGAGGAACGGCGTCGAGATCGTCTGGAAGTGGACTTTGACTCTTTGCTGCTTTTGGCAATCTTCACTGTTAAACTCAAGATTCATGATGTGAGCAGTCGTCTGGAGATCTGATAATCCGCCATATTATGATCTTGTGTTGTTTCTATGCTTTCCTttcctttgttttctttgttgacGAGTCTCTAAAGTGTATAGTAAGTGTTCCGGATGTTTCTGTGATTAACCTCATGGACCATTTCAGTTCTCTGTCTTATGTTTTATGCACAAAAGAAATGATATCATGATATATGATGAATATGAGTAGATCATGGGGCTAAAattcacattaaaaaatactgtagtaacttacggtaaacactgcagtgtttttgaAGCGTACAGTAGTACAGTACAATTAATCTGGT

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007275 multicellular organism development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005912 adherens junction cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045296 cadherin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-43 Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion and cell-cell junction assembly. Predicted to act upstream of or within calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member).

Ensembl:

ensembl_id ENSDART00000145220

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005791 lncRNA upstream 46034 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005661 lncRNA upstream 68167 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005790 lncRNA upstream 182995 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005789 lncRNA upstream 273044 187819 ~ 193882 (+) False XLOC_001769
TCONS_00005662 lncRNA downstream 34923 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 35062 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 35539 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005794 lncRNA downstream 35539 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005793 lncRNA downstream 35539 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003580 mRNA upstream 12304 453619 ~ 454622 (+) True XLOC_001782
TCONS_00003579 mRNA upstream 17767 439692 ~ 449159 (+) True XLOC_001781
TCONS_00003578 mRNA upstream 34738 428269 ~ 432188 (+) True XLOC_001780
TCONS_00003576 mRNA upstream 49738 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003577 mRNA upstream 49738 413502 ~ 417188 (+) True XLOC_001778
TCONS_00003582 mRNA downstream 1168 506538 ~ 512306 (+) False XLOC_001784
TCONS_00003584 mRNA downstream 13176 518546 ~ 532628 (+) True XLOC_001785
TCONS_00003585 mRNA downstream 57882 563252 ~ 566607 (+) True XLOC_001787
TCONS_00003586 mRNA downstream 68297 573667 ~ 590083 (+) False XLOC_001788
TCONS_00003587 mRNA downstream 70559 575929 ~ 589428 (+) False XLOC_001788
TCONS_00003569 other upstream 254979 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 1193 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 299874 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1159552 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1670213 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2183195 2688565 ~ 2688681 (+) True XLOC_001815

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000203_00425991_00429634.mRNA True 1888 mRNA 0.52 5 CI01000203 425991 ~ 430118 (+)