RNA id: TCONS_00003582


Basic Information

Item Value
RNA id TCONS_00003582
length 1424
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_001784
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 506538 ~ 512306 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTAAAAGTGCATCATAATCGGTTACAGAATCGGCGAATCTTCCTATGCAGAGCTGCAGAAATGAGTGAGAATCATCCATTACAGATGGAGGAGATTGAAACCAGCCCGAGGAGAAGCACTACAGAATGTTTCTCTCCTGTTGTCTCCTCATCTCCTGCTGAACACACAGCTCTGAGCTCCACAGCGGCCCCGCAGACGCATGCTGCTCCACAAGAACCCCCCCGCAGAAACACCAGCATCCGCGCGGCTCATCCGGCCATTTACCTGAACACTAGCTCACACAAGCTCCTGCGGAAGGCAGTGCGCATCTGGAAGAGGCCGTTCCCCGTCTTCACCCCTCTGTCCTCAGTGTCGAGGGTCAGGAGTTTTCAGGAGCGGGTTCAGATGCTCCAGAGTCAGCCTGCAGTCTCCAGATCCCCGCAGCCCGTGTCCAGATGCGTCAGAGATCTGCAGCTGCGCAGTTCTGGGACGGATTCCTCCCCGTCGCCCTCCAGTAGGTCAGATCAGCCTCCGATCCGTCGCCGCAAGCGCCCGGCAGTTATACGCAGCTACAGATACCGCAGACAGATGCAGTTATACCGCATGCTGTCCAGCTGCAGGAGACTCAAGCAGGAGGAGCGGACAGTGCACACACTGCAGGGTCAGTCGTCACCTGCGGGATCCTCTCCTGTTAAAGGTTCTCAGGGTGCAGATGATGGGTCAGATTCAGAGTCTTCTCCAGTGATCCGTCCACCACCGAGGAAGACGAACCGTCGGCTGTGGCGCAGACAACTGGACAGCAGCAGCTCCGACAGCGGCCCGATCACCACTAATCCCTTTACCACAGGAGCAGACACACTGAAGAAAAACTCCAGCAGAGCGCTCTCAGATTTCGCAAGTGTGCTGAAAACCTCCCTGAGCTTGATCGGGAGCGATGTGAACTCCTCTGAGGTCGTCCCAAAGAAATCATCGACTACTCAAATGTATGAGGACTCAGACGAGCAACGGGAGAAGACCCCGAGCTCTTTCGTTTCTCGGCTGAAGATGTTCAAAGAGAAGCTCAGGCAGTGTGGAGAGGTCAGGACGTCCCCGGCGTGTGTGAAGTGGAAAAGTGTGCTTCTTCAGAGAGCTCTGCGCTCCCCTGCACTGTCCTGCGAGAGTCCGAGTCCTGAGACATCATGGTGCAGGTTTACACTGCTGGACTGCTCAACACCTGCAGGCCGGAGCGACACAGACACACCTCAGGTCAACACTGAAGGCCACAACAAGAACAGCATGGCAGGAGATTACTAGTCTTGATCTTCAGATTCCCGTGGATGAAGTGAACCAAGCAGACGATCAGGAGCTCAGTGTTGATTTCAGAACTAATCTCTGCACTCGGCTTGATGAAGTACTGCTGTTGTTTTAATCTGCCCTATTAAACTGGTATTTAATCAGCACTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141713

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005791 lncRNA upstream 85646 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005661 lncRNA upstream 107779 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005790 lncRNA upstream 222607 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005789 lncRNA upstream 312656 187819 ~ 193882 (+) False XLOC_001769
TCONS_00005662 lncRNA downstream 27987 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 28126 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 28603 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005794 lncRNA downstream 28603 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005793 lncRNA downstream 28603 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003581 mRNA upstream 1168 466926 ~ 505370 (+) True XLOC_001783
TCONS_00003580 mRNA upstream 51916 453619 ~ 454622 (+) True XLOC_001782
TCONS_00003579 mRNA upstream 57379 439692 ~ 449159 (+) True XLOC_001781
TCONS_00003578 mRNA upstream 74350 428269 ~ 432188 (+) True XLOC_001780
TCONS_00003576 mRNA upstream 89350 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003584 mRNA downstream 6240 518546 ~ 532628 (+) True XLOC_001785
TCONS_00003585 mRNA downstream 50946 563252 ~ 566607 (+) True XLOC_001787
TCONS_00003586 mRNA downstream 61361 573667 ~ 590083 (+) False XLOC_001788
TCONS_00003587 mRNA downstream 63623 575929 ~ 589428 (+) False XLOC_001788
TCONS_00003588 mRNA downstream 73413 585719 ~ 589660 (+) False XLOC_001788
TCONS_00003569 other upstream 294591 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003590 other downstream 292938 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1152616 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1663277 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2176259 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 2472738 2985044 ~ 3026523 (+) True XLOC_001822

Expression Profile

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