RNA id: TCONS_00003583


Basic Information

Item Value
RNA id TCONS_00003583
length 192
RNA type processed_transcript
GC content 0.49
exon number 2
gene id XLOC_001784
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 506538 ~ 512306 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAATCGGCGAATCTTCCTATGCAGAGCTGCAGAAATGAGTGAGAATCATCCATTACAGATGGAGGAGATTGAAACCAGCCCGAGGAGAAGCACTACAGACTTGTTTATGTGTTGCAGAATGTTTCTCTCCTGTTGTCTCCTCATCTCCTGCTGAACACACAGCTCTGAGCTCCACAGCGGCCCCGCAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140342

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005791 lncRNA upstream 85671 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005661 lncRNA upstream 107804 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005790 lncRNA upstream 222632 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005789 lncRNA upstream 312681 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA upstream 312681 190543 ~ 193882 (+) True XLOC_001769
TCONS_00005662 lncRNA downstream 33037 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 33176 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA downstream 33653 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005794 lncRNA downstream 33653 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005793 lncRNA downstream 33653 540909 ~ 543063 (+) False XLOC_001786
TCONS_00003581 mRNA upstream 1193 466926 ~ 505370 (+) True XLOC_001783
TCONS_00003580 mRNA upstream 51941 453619 ~ 454622 (+) True XLOC_001782
TCONS_00003579 mRNA upstream 57404 439692 ~ 449159 (+) True XLOC_001781
TCONS_00003578 mRNA upstream 74375 428269 ~ 432188 (+) True XLOC_001780
TCONS_00003576 mRNA upstream 89375 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003584 mRNA downstream 11290 518546 ~ 532628 (+) True XLOC_001785
TCONS_00003585 mRNA downstream 55996 563252 ~ 566607 (+) True XLOC_001787
TCONS_00003586 mRNA downstream 66411 573667 ~ 590083 (+) False XLOC_001788
TCONS_00003587 mRNA downstream 68673 575929 ~ 589428 (+) False XLOC_001788
TCONS_00003588 mRNA downstream 78463 585719 ~ 589660 (+) False XLOC_001788
TCONS_00003569 other upstream 294616 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003590 other downstream 297988 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1157666 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1668327 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2181309 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 2477788 2985044 ~ 3026523 (+) True XLOC_001822