RNA id: TU790965


Basic Information

Item Value
RNA id TU790965
length 739
lncRNA type intronic
GC content 0.50
exon number 2
gene id G694860
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30024850 ~ 30027627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagatagagagagagaggaaatagagagggagagatagagagagaggaaatagagggggagacagagagagagagagagagaggaaatagagggcgagacagatagagagagcggaaatagagggggagacagatagagagagagaggaaatagagggggagacagatagagagagagagagaagaaatagagggggagacagagagagaggaaatagagtgggagacagatagagagagaggaaatagagggggagacagagagagagagagaggaaatagagggggagacagagagagagagagaggggggagacagagagagagcgaggaaatagagggggagacagagagagaggaaatagtggagacagagagagagaggaaatagagggggagacagagagagagaggaaatagatgaggagacagggagagaggaaatagtggaggagacagagagagagaggaaatagagggggcgacagagagagagaggaaatagaggaggagacagagagagaggaaatagtggaggagacagagagagaggaaatagagggggagacagatagagagagagaggaaatagagagggagagatagagagagaggaaatagagggggagacagagagagagagagaggggaaatagagggggagacagatagagagagaggaaatagagagggagagatagagagagaggaaatagaggtggagacacagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790786 lncRNA downstream 92807 29931811 ~ 29932043 (-) True G694706
TU790785 lncRNA downstream 93465 29931000 ~ 29931385 (-) True G694705
TU790776 lncRNA downstream 103397 29921128 ~ 29921453 (-) True G694697
TU790753 lncRNA downstream 130077 29890662 ~ 29894773 (-) True LOC110529761
TU790751 lncRNA downstream 136269 29888306 ~ 29888581 (-) True G694673
TU791003 lncRNA upstream 67127 30094754 ~ 30094981 (-) True G694898
TU791006 lncRNA upstream 72555 30100182 ~ 30100426 (-) True G694901
TU791009 lncRNA upstream 76345 30103972 ~ 30104230 (-) True G694904
TU791013 lncRNA upstream 80179 30107806 ~ 30112851 (-) True G694908
TU791025 lncRNA upstream 98118 30125745 ~ 30125947 (-) True G694919
XM_036985246.1 mRNA downstream 38491 29972511 ~ 29986359 (-) False gtf2a1
XM_036985247.1 mRNA downstream 38491 29972511 ~ 29986359 (-) False gtf2a1
XM_036985248.1 mRNA downstream 38491 29972511 ~ 29986359 (-) False gtf2a1
XM_036985250.1 mRNA downstream 38491 29972511 ~ 29986359 (-) True gtf2a1
XM_036985249.1 mRNA downstream 39828 29972511 ~ 29985022 (-) False gtf2a1
XR_005052851.1 mRNA upstream 10954 30038581 ~ 30040011 (-) True LOC118965505
XM_021612284.2 mRNA upstream 189381 30217008 ~ 30227240 (-) False LOC110529769
XM_021612285.2 mRNA upstream 189381 30217008 ~ 30227240 (-) False LOC110529769
XM_021612286.2 mRNA upstream 189381 30217008 ~ 30227240 (-) False LOC110529769
XM_021612287.2 mRNA upstream 189381 30217008 ~ 30227240 (-) False LOC110529769
TU789639 other downstream 1066018 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1430419 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1542952 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1908802 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2708915 27315568 ~ 27315935 (-) True G691747
TU790963 other upstream 10961 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 819275 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 827480 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1449727 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1630099 31657726 ~ 31679735 (-) True LOC110529793

Expression Profile