RNA id: TU791009


Basic Information

Item Value
RNA id TU791009
length 259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G694904
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30103972 ~ 30104230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTACTTCCATATGtctggggagtctcccacatgccttttgacgAACACCAATACTGTTAGCTTGTTTTCTTCTTGatgcaatggcttttttctgtccACTGTTCCATAAAgcacagctctgtggagtgtattttttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacagcctaggaacagtgagttaactgccttgtttggcttgtatggcttaaagtggtcctatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791006 lncRNA downstream 3546 30100182 ~ 30100426 (-) True G694901
TU791003 lncRNA downstream 8991 30094754 ~ 30094981 (-) True G694898
TU790970 lncRNA downstream 17832 30018897 ~ 30086140 (-) True G694865
TU790965 lncRNA downstream 76345 30024850 ~ 30027627 (-) True G694860
TU790786 lncRNA downstream 171929 29931811 ~ 29932043 (-) True G694706
TU791013 lncRNA upstream 3576 30107806 ~ 30112851 (-) True G694908
TU791025 lncRNA upstream 21515 30125745 ~ 30125947 (-) True G694919
TU791033 lncRNA upstream 33511 30137741 ~ 30137983 (-) True G694927
TU791034 lncRNA upstream 36279 30140509 ~ 30140837 (-) True G694928
TU791037 lncRNA upstream 38873 30143103 ~ 30143391 (-) True G694931
XM_036985251.1 mRNA downstream 41728 30001764 ~ 30062244 (-) True ches1
XM_036985252.1 mRNA downstream 42005 30001764 ~ 30061967 (-) False ches1
XR_005052851.1 mRNA downstream 63961 30038581 ~ 30040011 (-) True LOC118965505
XM_036985247.1 mRNA downstream 117613 29972511 ~ 29986359 (-) False gtf2a1
XM_021612284.2 mRNA upstream 112778 30217008 ~ 30227240 (-) False LOC110529769
XM_021612285.2 mRNA upstream 112778 30217008 ~ 30227240 (-) False LOC110529769
XM_021612286.2 mRNA upstream 112778 30217008 ~ 30227240 (-) False LOC110529769
XM_021612287.2 mRNA upstream 112778 30217008 ~ 30227240 (-) False LOC110529769
XM_036985272.1 mRNA upstream 115642 30219872 ~ 30227240 (-) False LOC110529769
TU790962 other downstream 41804 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 41804 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1145140 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1509541 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1622074 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU792305 other upstream 742672 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 750877 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1373124 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1553496 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 2110256 32214486 ~ 32217549 (-) False LOC110529804

Expression Profile