RNA id: TU791047


Basic Information

Item Value
RNA id TU791047
length 4115
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G694939
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30154300 ~ 30159354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATGTGTAGGATATGCTGTGTTGGCTAATATTCATGTGCGGCTGTCATTTTTAAAACTCCATTCTAGCATACATGACACACACATCTATCTACGTACATGCTTTTATTTGGGTTTGCAAGGTATAAGATGTAATGTTTCTTTAGGCCTGCTGCTAGTTACTTGAAATGAGACAAATAATCATGACAAAACATGGTTCGAAAAATGTAAttcactgacagagagacagctaaTGAAACACTAGAATCCTGAGCAGGCACATTGACGTTTACAGTAGCTGGCTAGGCTAGTCAAACTAACATTGGCTAACTTTCAATAAATTGGTAAAATGGTCAACGGAGTTGCGTCTTCGTACGATCAAGACAATTCATATTGCATGCTGCATATTTCAAGTGCACTCGAAAACATATTTATCTTTTTCAGTCTTTGGGAGttcatcacacacagacagacagcagcttgAGTTTTCACCAGGCTCTGTTTACATCTTAGGAGCAGGCCATTGGCTGCATTGATCACAAGGGGTATGTACAGGAGTTCTGATTGGTTCCAAGTTTAGCAGTTCGGTGTTGAAATGTACATTTTTATGATCAAATGTGCAAGAATTGAAGGCGCTAACAAATGTTATAGCCATAAGAATGTTTTACTGTCATAAACAAAAAATCAGCTCCTCTCTCGATTGGGATTGATCAACTTCATGTTCTTTGGCTTTGACCCCCCCAATCTATTATACCGATTTATGACTTCCTCTTGGCACATACTGTAACAAAAAAGTGGATTAAATGTTTAGAAGCGGAATATCTGATTATTCTTTTGCTTCTTTGCCAGGCCTTGATTTGGAGTGAAAGCCGGATGTGACTTTATTTACTCGACTAGGCTTATGCATTGAATTATGATGATGACTCACAGAAACAGTATGTTAATCATACTGTATCCTAATTCACTTCTACCCAATAGCCGCATGGGAGCTCTCATAAGCCATTGAGATAATGCACAACTCCCACCTTTTCTCTCAGCTCTCTGCGCTCACCCTCATTCGCACATGCTTCATAATGGGATTGTGATTGATATACTTATTGTTGCAGCAATTTACTCCTATTCACATAATGACTGAGGTTTTACTAATCGAATGAATAAGCCAGTCTTTCTACGCCCGTCATCACCTCATGTGCATCTGTCTGGTCTAATTCAAGAGCCTTTGTAAGACTGTTTACCCCGGACAAGAATTAACCACACCAGACTCAAAATAGCCTATCTAGCTCTAGCATGTCAGCACCTTTTAACATTCTTGTTGTTACACGTGCAGGGACATTAGTTTCACAACCCCATGGCCCCAATAGGAAGAAAATCTCCAGTCTCTAGCTTTTCAACACCTCATCTCTATTTCGTCATATCTCAAGTCATCTGTATTTATGTTAGCTATATGTGTTTATCCAGTGTGGCGGCAGTGTTCTTGGGAATGGGCATAAAGGGAATAGTGAGTGGGCAGCCACTTAACACTCAACTCCAGCTAGGAACTCCACAAAGAGCTATTGTGACTACATGTGATTTGACAGGAGCTTTGAATAACGCAGTGAGTCACCATCTCTTCTCACACCTCCTGTTTGCTAGGCAGCGGTGAAGAggctccctcaccctctctctgcctccctcctgaGGGACAGTAGCCAACTACTAGCCTCGGCTCCCAGGTCTCGCTCCTGTTGGTGAAAGCCTGGTAGAGGCTAGCCAACTACTGTTCTCTCTGTGATAAAGTTAGTCCCAACGGGACAACATACAAACAAGACCACCAAACAAGATAATTTCAGGCTTATCCATATTTTTTCTGTCATATTCTTGCCAGTACTCTACAGTTAGTTGTAATTTCTTTGTCAACAGTATAGTCACCCAATGATACATTGGTTgtttcaaaatggatgaaattacaAAGTAGCAAAAACAATCTGCTAGTGACAATAAGTAGCAGAGTTGTATCATTTTCTCAATAATATACTGTACCACTGTTTCAAATCGTGACATGAAATTAGATCACCATTTGGTACAAAAATATTAGGTCACATTAATTTGCTGACTCATACTGTGGGCTATGCTGTATTCAGACCGCCACACCTGTTATACTGCTTCTCCACTGTAGTGCGTTATTAGAGGTAACAGGGAAGACATGATAAATTGGCTTTTTCTTTTCTCTACGGCTTTTCGGAATAACTAGCTGGGTATTGAGACATTCAGCACGAAAGCTCGCTGTGATGTAAATCTGTAGGAGTCTGTCTCACTAGCACCATGTATAATTTGAGCATCTTCTTCGGTGCGTTCAACAAGGCGTGTGAAGAGGCGTATGTCGCCCCTGCTCCAACCCAATCCATAATGTAGACTGTGATCTGAACagttctgctcttctctctctctctctctctctctctctctctctgctcattaCTGCTTTCTTTCCCCCAAAACTGGCTCTCCTTTTCACAGATCTGTCCATTTCTACTTCTCCGTTTTCTCTTTCACCCAACCGGCCATTTTGTTTTCTTACAGATCCCTTTCtcacttgtctctctctttctctcattccagtTTCAGAATAGAACGAGAACATAACACCTCTGTCGTGGAAAGAATGAGAAAAAAGGCCCTGAAATAACCTTAGAGAGAGACTTGTTTTTCATGGCATTAATATGAGCATGCTGGCCAGGTCCAGATAGATATGGACAAAAGAGTGATACTTCATTGTTAGAGTCCGTATGCTGCTGCCTTATGGTGCTTCCACATAGTGTGGTGAAACAGCAAGATAACAGCCCTCTGATAATACGCTCTAAATTGGAATCTCGAAAGAATAGaattctgtttttcattttggaTAGAATAAATAGATATCCATTAGTATGTAATGGCGCAGTGCTGTGCTGGGTGTTATTGTCCATTGCACTATGTCTCAAACATAACAGATAACAAGTTAGAGGCGGCAGTGCAATGGAAAACCCATTACAGCTGATGAACATAACAAGTCTGTAGCCATAACCACTCAGACAGAAGCATGATATTTAGACAGCTGAATGTGGCAAACAGAAACCCTGTCTCTAAAAGTCTTGCCTGCCTTTTCATAAGGCTGTCTCCCCTTATAGATCGGTTGCGGTTTCTTACACATAGTGGAAATTCAGTATTTTTCTCAGAAGGCTACTTCCCCTCTAGGTGTTTTCTCTGAAAAGCAGGCGAGCGGTGGGTCTTCTTGATCAAGATGACAGTATAGGGTGTTTGTAGTCGTGGTGATGAGCAGTTTGTTGGCTAGCTGTTATTCGCTAGTGATATGAAGAATACCATAGGGTAGTTTGAAACCACTCAGCTACAATGTCTTTGGGTAGCTTTCTGTATTCTGTAGTGTCACCATGGAAACTGCCTCAGTAACTAACCACCAGATTCCAGCAGTAGCTACAGTTGGTTGTGATCCAGATGTGGGTGAAGGAGACACGTGCACACCAACACACTCATGTACGCACGCACATAGACACTGCCTGATGAACCAGCATGCATCAGAGAAGAATGGGTGGCGGCAGGCAGAGTTCTCTTACAGTGGAACCTCGTTGCGGTATAGGTTGGTACTTCAGGTCAATTATTCTCCTGTGATGGACAGCTTGATTAAGTAGGGCAGACGTATTGTATTTCATTGTCCCTACAGTTATGAAACGGCAAACTTCCTGCACACTGAATGCCAATGCACTTCCTTTCCCTTCGCAGCTTGATTGGATGTGCGGGGTGTACGTGACATATTCTGAACTGATGTGGTCTGGCCAGGCTTTAGTCCATGGGGTCAATTATTCTCCTGGAATTGAGTTGGGTATTGTACATTTCTCTATTTGTTCAATTAAAACCAATGCATTTTTAGAGGAAGTCCTGATTTCTTGTGACTGTCTCTCTGGCCAGTCAATCAGTCTGACTTATATGTATACGTAGGTGTAGGCCTATCTATCCACGCTGGTCTCTGCCAGGCGGTTGTTCATGATGCCCAGGGCGCCCACCCCTCCGGAGAAGCCATTGTGGCGGGAGCTGGAGCTTGACTGGCGAGGGTGACCATTAGCCATCTCTGACAGCTGCTTCTGCATGATGGCCAGGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791043 lncRNA downstream 3245 30150040 ~ 30151055 (-) True G694937
TU791038 lncRNA downstream 9258 30144755 ~ 30145042 (-) True G694932
TU791037 lncRNA downstream 10909 30143103 ~ 30143391 (-) True G694931
TU791034 lncRNA downstream 13463 30140509 ~ 30140837 (-) True G694928
TU791033 lncRNA downstream 16317 30137741 ~ 30137983 (-) True G694927
TU791226 lncRNA upstream 16590 30175004 ~ 30175377 (-) True G695092
TU791234 lncRNA upstream 28058 30186472 ~ 30187500 (-) True G695099
TU791237 lncRNA upstream 69727 30228141 ~ 30233037 (-) True G695102
TU791235 lncRNA upstream 93067 30251481 ~ 30252854 (-) True G695100
TU791312 lncRNA upstream 134040 30292454 ~ 30296845 (-) True LOC110529226
XM_036985251.1 mRNA downstream 92056 30001764 ~ 30062244 (-) True ches1
XM_036985252.1 mRNA downstream 92333 30001764 ~ 30061967 (-) False ches1
XR_005052851.1 mRNA downstream 114289 30038581 ~ 30040011 (-) True LOC118965505
XM_036985247.1 mRNA downstream 167941 29972511 ~ 29986359 (-) False gtf2a1
XM_021612284.2 mRNA upstream 58594 30217008 ~ 30227240 (-) False LOC110529769
XM_021612285.2 mRNA upstream 58594 30217008 ~ 30227240 (-) False LOC110529769
XM_021612286.2 mRNA upstream 58594 30217008 ~ 30227240 (-) False LOC110529769
XM_021612287.2 mRNA upstream 58594 30217008 ~ 30227240 (-) False LOC110529769
XM_036985272.1 mRNA upstream 61458 30219872 ~ 30227240 (-) False LOC110529769
TU790962 other downstream 92132 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 92132 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1195468 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1559869 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1672402 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU792305 other upstream 688488 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 696693 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1318940 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1499312 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 2056072 32214486 ~ 32217549 (-) False LOC110529804

Expression Profile